Table 4.

Docking Energies Between N Protein and Cyclophilin A

Dock site	Minimum Interface Energy
Alignment with entire HIV-1 gag	–20.337
Alignment with HIV-1 gag PDB	–23.022
Luo et al., 2004	–15.852
Zdock	–17.941
Cis proline 199	–24.741
Cis proline 364	–20.71

Minimum energy of amino acids at the interface between SARS-CoV-2 nucleocapsid protein and cyclophilin A predicted from Rosetta local docking.

Abbreviations: N, nucleocapsid; PDB, Protein Data Bank; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.