Fig 4. SmartMap and uniread analyses of ICeChIP-seq input depth.

All analyses conducted on 200bp genomic windows for the Inputs defined in Table 2. (A) Quantile plot of read depth for SmartMap and uniread analyses. (B) Median read depth vs. mappability score (UMAP50) for SmartMap and uniread analyses. (C) Quantile plot of excess read depth in SmartMap relative to uniread analysis. (D) Median excess read depth vs. mappability score (UMAP50). (E) QQ plot of read depth in SmartMap vs. uniread analysis. Color scale represents percentile of each point, from 1^st to 99^th percentiles. Dashed line represents line with slope of unity. (F) Quantile plots of depth-normalized log ratio of read depths of biological input replicates under SmartMap and uniread analysis. Graph breaks are present on both the upper and lower ends of the graphs. (G) Mean absolute depth-normalized log ratio for the comparisons presented in panel F.