Fig 7. Analysis of increased usable read depth.

This figure graphically represents the data in Tables 1 and 2. (A) The percent increase in the number of reads usable in SmartMap analysis (reads with 1–50 alignments) relative to uniread analysis (reads with 1 alignment). (B) Percentage of the total number of regions with an increase in read depth in the SmartMap dataset relative to the uniread dataset. For all datasets except the ENCODE RNA-seq datasets, the list of regions analyzed is the set of 200bp genomic windows across the relevant genome (hg38, mm10, or dm3). For the ENCODE RNA-seq dataset, the list of regions analyzed is the set of distinct Refseq genes. (C) Percent increase in the number of regions with nonzero read depth in the SmartMap dataset relative to the uniread dataset. Regions are defined as per panel B.