Table 2.
Variant ID | Reference allele | Variant allele | Frequency of variant allele |
||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AFR |
AMR |
EAS |
EUR |
SAS |
|||||||||||||||||||||||||
ALLa | YRI | LWK | GWD | MSL | ESN | ASW | ACB | MXL | PUR | CLM | PEL | CHB | JPT | CHS | CDX | KHV | CEU | TSI | FIN | GBR | IBS | GIH | PJL | BEB | STU | ITU | |||
rs4830542 | T | C | 0.32 | 0.63 | 0.48 | 0.59 | 0.56 | 0.55 | 0.42 | 0.52 | 0.21 | 0.36 | 0.37 | 0.15 | 0.04 | 0.03 | 0.03 | 0.06 | 0.03 | 0.38 | 0.40 | 0.34 | 0.28 | 0.35 | 0.31 | 0.33 | 0.22 | 0.26 | 0.29 |
rs2074192 | C | T | 0.36 | 0.3 | 0.42 | 0.29 | 0.36 | 0.32 | 0.41 | 0.35 | 0.42 | 0.34 | 0.34 | 0.53 | 0.46 | 0.43 | 0.41 | 0.37 | 0.47 | 0.35 | 0.42 | 0.46 | 0.5 | 0.41 | 0.24 | 0.28 | 0.25 | 0.18 | 0.18 |
rs233575 | A | G | 0.14 | 0.00 | 0.02 | 0.01 | 0.00 | 0.00 | 0.07 | 0.01 | 0.18 | 0.21 | 0.32 | 0.12 | 0.01 | 0.00 | 0.00 | 0.01 | 0.00 | 0.36 | 0.4 | 0.29 | 0.27 | 0.34 | 0.19 | 0.26 | 0.15 | 0.14 | 0.17 |
rs1514280 | G | A | 0.20 | 0.20 | 0.15 | 0.30 | 0.23 | 0.25 | 0.18 | 0.14 | 0.20 | 0.29 | 0.34 | 0.12 | 0.01 | 0.00 | 0.00 | 0.01 | 0.00 | 0.38 | 0.39 | 0.33 | 0.27 | 0.35 | 0.22 | 0.26 | 0.17 | 0.15 | 0.18 |
rs4240157 | T | C | 0.32 | 0.63 | 0.48 | 0.59 | 0.55 | 0.56 | 0.42 | 0.52 | 0.21 | 0.36 | 0.37 | 0.15 | 0.04 | 0.03 | 0.03 | 0.06 | 0.03 | 0.38 | 0.4 | 0.36 | 0.29 | 0.35 | 0.31 | 0.33 | 0.22 | 0.26 | 0.29 |
rs879922 | G | C | 0.32 | 0.63 | 0.49 | 0.6 | 0.55 | 0.56 | 0.42 | 0.52 | 0.21 | 0.36 | 0.37 | 0.14 | 0.04 | 0.03 | 0.03 | 0.06 | 0.03 | 0.39 | 0.4 | 0.34 | 0.28 | 0.36 | 0.32 | 0.33 | 0.22 | 0.27 | 0.29 |
rs4646156 | T | A | 0.20 | 0.22 | 0.24 | 0.19 | 0.17 | 0.17 | 0.18 | 0.20 | 0.17 | 0.36 | 0.30 | 0.12 | 0.01 | 0.00 | 0.00 | 0.02 | 0.01 | 0.40 | 0.38 | 0.33 | 0.29 | 0.34 | 0.23 | 0.28 | 0.16 | 0.17 | 0.17 |
rs4646155 | C | T | 0.06 | 0.19 | 0.09 | 0.16 | 0.11 | 0.17 | 0.10 | 0.10 | 0.01 | 0.04 | 0.01 | 0.01 | 0.04 | 0.03 | 0.03 | 0.05 | 0.03 | 0.00 | 0.01 | 0.00 | 0.00 | 0.00 | 0.09 | 0.06 | 0.05 | 0.11 | 0.11 |
rs4646188 | A | G | 0.04 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 | 0.03 | 0.05 | 0.03 | 0.02 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.09 | 0.10 | 0.13 | 0.21 | 0.14 | 0.07 | 0.09 | 0.05 | 0.04 | 0.06 |
rs4646142 | G | C | 0.36 | 0.19 | 0.17 | 0.31 | 0.24 | 0.28 | 0.26 | 0.24 | 0.36 | 0.27 | 0.37 | 0.36 | 0.51 | 0.55 | 0.56 | 0.55 | 0.53 | 0.26 | 0.19 | 0.26 | 0.24 | 0.25 | 0.4 | 0.4 | 0.55 | 0.53 | 0.52 |
rs2048683 | G | T | 0.20 | 0.21 | 0.23 | 0.19 | 0.17 | 0.17 | 0.17 | 0.20 | 0.17 | 0.36 | 0.3 | 0.12 | 0.01 | 0.00 | 0.00 | 0.02 | 0.01 | 0.41 | 0.39 | 0.34 | 0.29 | 0.34 | 0.23 | 0.26 | 0.16 | 0.17 | 0.16 |
rs2285666 | C | T | 0.35 | 0.17 | 0.16 | 0.3 | 0.21 | 0.19 | 0.24 | 0.21 | 0.36 | 0.27 | 0.37 | 0.36 | 0.51 | 0.55 | 0.56 | 0.55 | 0.52 | 0.26 | 0.19 | 0.26 | 0.22 | 0.25 | 0.40 | 0.40 | 0.55 | 0.53 | 0.52 |
rs6632677 | G | C | 0.02 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.00 | 0.04 | 0.01 | 0.03 | 0.06 | 0.09 | 0.10 | 0.08 | 0.04 | 0.03 | 0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.02 | 0.01 | 0.00 |
rs2106809 | A | G | 0.32 | 0.07 | 0.08 | 0.09 | 0.10 | 0.04 | 0.12 | 0.12 | 0.36 | 0.26 | 0.34 | 0.36 | 0.52 | 0.51 | 0.56 | 0.51 | 0.51 | 0.26 | 0.20 | 0.24 | 0.26 | 0.28 | 0.39 | 0.40 | 0.53 | 0.56 | 0.54 |
rs1978124 | C | T | 0.21 | 0.13 | 0.10 | 0.08 | 0.07 | 0.11 | 0.16 | 0.06 | 0.21 | 0.40 | 0.38 | 0.12 | 0.01 | 0.00 | 0.00 | 0.02 | 0.01 | 0.52 | 0.52 | 0.48 | 0.41 | 0.43 | 0.27 | 0.28 | 0.18 | 0.19 | 0.17 |
All populations (ALL); African super-population (AFR)- ((Yoruba in Ibadan, Nigeria (YRI); Luhya in Webuye, Kenya (LWK); Gambian in Western Divisions in the Gambia (GWD); Mende in Sierra Leone (MSL); Esan in Nigeria (ESN); Americans of African Ancestry in SW USA (ASW); African Caribbeans in Barbados (ACB)); Ad Mixed American (AMR)- ((Mexican Ancestry from Los Angeles USA (MXL); Puerto Ricans from Puerto Rico (PUR); Colombians from Medellin, Colombia (CLM); Peruvians from Lima, Peru (PEL)); East Asian (EAS)- ((Han Chinese in Beijing, China (CHB); Japanese in Tokyo, Japan (JPT); Southern Han Chinese (CHS); Chinese Dai in Xishuangbanna, China (CDX); Kinh in Ho Chi Minh City, Vietnam (KHV)); European (EUR)- ((Utah Residents (CEPH) with Northern and Western European Ancestry (CEU); Toscani in Italia (TSI); Finnish in Finland (FIN); British in England and Scotland (GBR); Iberian Population in Spain (IBS)); South Asian (SAS)- ((Gujarati Indian from Houston, Texas (GIH); Punjabi from Lahore, Pakistan (PJL); Bengali from Bangladesh (BEB); Sri Lankan Tamil from the UK (STU); Indian Telugu from the UK (ITU)).