Table 1.
Category | Genes included | Rationale |
---|---|---|
Genes included in the American College of Medical Genetics secondary findings (ACMG SF) v2.0 [24] |
Cancer risk: BRCA1, BRCA2, MLH1, MSH2, MSH6, PMS2, RET, BMPR1A, SMAD4, TP53, MEN1, TSC1, TSC2, PTEN, STK11, APC, VHL, NF2, RB1, SDHD, SDHAF2, SDHC, SDHB, MUTYH, WT1 Cardiovascular risk: FBN1, TGFBR1, TGFBR2, SMAD3, ACTA2, MYH11, COL3A1, LDLR, APOB, PCSK9, RYR2, KCNQ1, KCNH2, SCN5A, MYBPC3, MYH7, TNNT2, TNNI3, TPM1, MYL3, ACTC1, PRKAG2, MYL2, LMNA, PKP2, DSP, DSC2, TMEM43, DSG2 Metabolic: GLA, OTC, ATP7B Other: RYR1, CACNA1S |
Well described, evidence for medical intervention, commonly evaluated [25] |
Moderate penetrance cancer risk |
Breast cancer risk: ATM, CHEK2, PALB2, BARD1 Colon cancer risk: GREM1, POLD1, POLE |
Commonly included on genetic testing panels with similar phenotypes as some genes in the ACMG SF v2.0 [24, 26] |
Moderate evidence cardiomyopathy risk [27] | Cardiovascular risk: CSRP3, TNNC1, JPH2 | Commonly included on genetic testing panels with similar phenotypes as some genes in the ACMG SF v2.0 [24, 26] |
Genes that have limited evidence of gene-disease association for hypertrophic cardiomyopathy [27] | Limited evidence hypertrophic cardiomyopathy risk: TTN, KLF10, MYPN, ANKRD1 | Included as preliminary evidence add-on genes on genetic testing panels [26] |
Genes that have refuted or disputed evidence of gene-disease association for breast cancer risk [28] | BRIP1, RAD51C | Included on broad cancer panels, may not relate to indication for testing, and yet would have management recommendations if a pathogenic/likely pathogenic variant is identified [26] |
Genes associated with risk for neurodegenerative disorders | HTT, APP, PSEN1, PSEN2, MAPT, GRN, SOD1, c9orf72, ApoE | Not clinically actionable |
Exome | Not Applicable | Increasingly common genetic testing in which multiple genetic conditions are under consideration |