REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit Monoclonal Anti-FOXA2 (Clone EPR4466) | Abcam | Cat#Ab108422; RRID: AB_11157157 |
Rabbit Polyclonal Anti-GAPDH | Abcam | Cat#Ab9485; RRID: AB_307275 |
Mouse Monoclonal Anti-GFAP (Clone GA5) | Millipore | Cat#MAB360; RRID: AB_11212597 |
Rabbit Polyclonal Anti-RFP | Rockland | Cat#600-401-379; RRID: AB_2209751 |
Mouse Monoclonal Anti-TH (Clone LNC1) | Millipore | Cat#MAB318; RRID: AB_2201528 |
Mouse Monoclonal Anti-Beta III Tubulin or TUBB3 (Clone 2G10) | Abcam | Cat#Ab78078; RRID: AB_2256751 |
Chemicals, peptides, and recombinant proteins | ||
Accutase® Cell Detachment Solution | Innovative Cell Technologies | Cat#AT104; RRID: AB_2869384 |
B-27™ Supplement (50×), Minus Vitamin A | Gibco | Cat#12587010; RRID: N/A |
Bovine Albumin Fraction V (7.5% Solution) | Gibco | Cat#15260037; RRID: N/A |
CHIR99021 | Tocris | Cat#4423; RRID: N/A |
DAPT | Cayman Chemical | Cat#13197; RRID: N/A |
DB-cAMP/Dibutyryl-cAMP | Biolog | Cat#D 009; RRID: N/A |
DirectPCR Lysis Reagent (Cell) | Viagen Biotech | Cat#302-C; RRID: N/A |
DMEM/F-12, GlutaMAX™ Supplement | Gibco | Cat#10565018; RRID: N/A |
DMEM, High Glucose | Gibco | Cat#11965092; RRID: N/A |
DNase Vial (D2) | Worthington Biochemical Corporation | Cat#LK003170; RRID: N/A |
Geltrex™ LDEV-Free, hESC-Qualified, Reduced Growth Factor Basement Membrane Matrix | Gibco | Cat#A1413302; RRID: N/A |
HBSS with 10 mM HEPES, Without Phenol Red | STEMCELL Technologies | Cat#37150; RRID: N/A |
Hibernate A | BrainBits | Cat#HA; RRID: N/A |
Hoechst 33342, Trihydrochloride, Trihydrate - 10 mg/mL Solution in Water | Invitrogen | Cat#H3570; RRID: N/A |
Laminin Mouse Protein, Natural | Gibco | Cat#23017015; RRID: N/A |
L-Ascorbic Acid (White Crystalline Powder) | Fisher Scientific | Cat#BP351-500; RRID: N/A |
LDN193189 | Stemgent | Cat#04-0074; RRID: N/A |
Leibovitz's L-15 Medium | Gibco | Cat#11415064; RRID: N/A |
N-2 Supplement (100×) | Gibco | Cat#17502048; RRID: N/A |
Opti-MEM™ I Reduced Serum Medium | Gibco | Cat#31985062; RRID: N/A |
PBS, pH 7.4 (-CaCl2, -MgCl2) | Gibco | Cat#10010023; RRID: N/A |
PDS Kit, Papain Vial | Worthington Biochemical Corporation | Cat#LK003176; RRID: N/A |
Penicillin-Streptomycin (10,000 U/mL) | Gibco | Cat#15140122; RRID: N/A |
Poly-L-Ornithine Hydrobromide | Sigma-Aldrich | Cat#P3655; RRID: N/A |
Proteinase K Solution (20 mg/mL) | Viagen Biotech | Cat#501-PK; RRID: N/A |
Purmorphamine | STEMCELL Technologies | Cat#72204; RRID: N/A |
Puromycin Dihydrochloride | Gibco | Cat#A1113803; RRID: N/A |
Recombinant Human BDNF Protein | R&D Systems | Cat#248-BD; RRID: N/A |
Recombinant Human GDNF Protein | R&D Systems | Cat#212-GD; RRID: N/A |
SAG | Cayman Chemical | Cat#11914; RRID: N/A |
SB431542 | Stemgent | Cat#04-0010-10; RRID: N/A |
StemFlex™ Medium | Gibco | Cat#A3349401; RRID: N/A |
Thiazovivin | Selleck Chemicals | Cat#S1459; RRID: N/A |
Trypan Blue Solution, 0.4% | Gibco | Cat#15250061; RRID: N/A |
Y-27632 Dihydrochloride | Tocris | Cat#1254; RRID: N/A |
Critical commercial assays | ||
Fontana-Masson Stain Kit (Melanin Stain) | Abcam | Cat#Ab150669; RRID: N/A |
Lipofectamine™ Stem Transfection Reagent | Invitrogen | Cat#STEM00003; RRID: N/A |
P3 Primary Cell 4D-NucleofectorTM X Kit S | Lonza | Cat#V4XP-3032; RRID: N/A |
Experimental models: Cell lines | ||
Human: BJ SiPS-D induced pluripotent stem cells | Harvard University | Cat#BJ SiPS-D: RRID: CVCL_X741 |
Human: WA01 (H1) embryonic stem cells | WiCell Research Institute | Cat#WA01; RRID: CVCL_9771 |
Oligonucleotides | ||
Primer: TH-TdTomato Forward: AGCCCTCTAGCCTCATCCTC |
This paper | RRID: N/A |
Primer: TH-TdTomato Reverse: GAGCCTCTGGAGCTGCTTG |
This paper | RRID: N/A |
Primer: 5Prime Reverse: ACATCCCCTGCTTGTTTCAA |
This paper | RRID: N/A |
Primer: 3Prime post-Cre Forward: TCCCTCAGACCCTTTTAGTCA |
This paper | RRID: N/A |
Primer: ACTB Forward: CCTGGCACCCAGCACAAT |
Pilegaard et al., 2003 | RRID: N/A |
Primer: ACTB Reverse: GCCGATCCACACGGAGTACT |
Pilegaard et al., 2003 | RRID: N/A |
Primer: FOXA2 Forward: GGGGTAGTGCATCACCTGTT |
Jo et al., 2016 | RRID: N/A |
Primer: FOXA2 Reverse: CCGTTCTCCATCAACAACCT |
Jo et al., 2016 | RRID: N/A |
Primer: GIRK2 (KCNJ6) Forward: TGCCCAAAGAGGAACTGGAAAT |
This paper | RRID: N/A |
Primer: GIRK2 (KCNJ6) Reverse: AGTCAACTTCGTAGAACCCGTC |
This paper | RRID: N/A |
Primer: LMX1A Forward: GCAAAGGGGACTATGAGAAGGA |
PrimerBank | Cat#291327512c1; RRID: N/A |
Primer: LMX1A Reverse: CGTTTGGGGCGCTTATGGT |
PrimerBank | Cat#291327512c1; RRID: N/A |
Primer: NURR1 (NR4A2) Forward: CAGGCGTTTTCGAGGAAAT |
Kirkeby et al., 2017 | RRID: N/A |
Primer: NURR1 (NR4A2) Reverse: GAGACGCGGAGAACTCCTAA |
Kirkeby et al., 2017 | RRID: N/A |
Recombinant DNA | ||
Plasmid: pTAHR TH-p2a-TD:Tomato (floxed selection Puro) | Ahfeldt et al., 2020; Addgene | Cat#135814; RRID: N/A |
CRISPR 1: pTACR TH1-p2aGFP | Ahfeldt et al., 2020; Addgene | Cat#135815; RRID: N/A |
CRISPR 2: pTACR TH2-p2aGFP | Ahfeldt et al., 2020; Addgene | Cat#135816; RRID: N/A |
Plasmid: pCAG-Cre:GFP | Matsuda and Cepko, 2007; Addgene | Cat#13776; RRID: Addgene_13776 |
Software and algorithms | ||
CellProfiler | https://cellprofiler.org/ | RRID:SCR_007358 |
Fiji | https://fiji.sc/ | RRID:SCR_002285 |
Other | ||
4D-NucleofectorTM Core Unit | Lonza | Cat#AAF-1002B; RRID: N/A |
Cell Culture Microplate, 96-well, PS, F-bottom (Chimney Well), μClear®, Black, CELLCOAT®, Poly-L-Lysine, Lid with Condensation Rings, 5 pcs./bag | Greiner | Cat#655936; RRID: N/A |
Corning® 125 mL Disposable Spinner Flask with 70 mm Top Cap and 2 Angled Sidearms, Sterile | Corning | Cat#3152; RRID: N/A |
Corning® Costar® Ultra-Low Attachment Multiple Well Plate | MilliporeSigma | Cat#CLS3471; RRID: N/A |
Countess™ Cell Counting Chamber Slides | Invitrogen | Cat#C10228; RRID: SCR_019815 |
Countess™ II FL Automated Cell Counter | Invitrogen | Cat#AMQAF1000; RRID: N/A |
Dropper Bulb, Natural Latex Rubber, 2 mL, 12 per Case | Research Products International | Cat#142823; RRID: N/A |
Falcon® Round-Bottom Tubes with Cell Strainer Cap, 5 mL | STEMCELL Technologies | Cat#100-0087; RRID: N/A |
Fisherbrand™ Disposable Borosilicate Glass Pasteur Pipets | Fisher Scientific | Cat#13-678-20D; RRID: N/A |
Fisherbrand™ Sterile Cell Strainers (70 μm) | Fisher Scientific | Cat#22-363-548; RRID: N/A |
pluriStrainer® 300 μm, 25 pcs. – Sterile (Cell Strainer) | pluriSelect | Cat#43-50300-03; RRID: N/A |
pluriStrainer® 500 μm, 25 pcs. – Sterile (Cell Strainer) | pluriSelect | Cat#43-50500-03; RRID: N/A |
Stirrers, Magnetic, Nine-position, Dura-Mag | Chemglass Life Sciences | Cat#CLS-4100-09; RRID: N/A |
Variable Speed 2D Rocker | USA Scientific | Cat#2527-2000; RRID: N/A |