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. 2021 Apr 19;2(2):100463. doi: 10.1016/j.xpro.2021.100463
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit Monoclonal Anti-FOXA2 (Clone EPR4466) Abcam Cat#Ab108422; RRID: AB_11157157
Rabbit Polyclonal Anti-GAPDH Abcam Cat#Ab9485; RRID: AB_307275
Mouse Monoclonal Anti-GFAP (Clone GA5) Millipore Cat#MAB360; RRID: AB_11212597
Rabbit Polyclonal Anti-RFP Rockland Cat#600-401-379; RRID: AB_2209751
Mouse Monoclonal Anti-TH (Clone LNC1) Millipore Cat#MAB318; RRID: AB_2201528
Mouse Monoclonal Anti-Beta III Tubulin or TUBB3 (Clone 2G10) Abcam Cat#Ab78078; RRID: AB_2256751

Chemicals, peptides, and recombinant proteins

Accutase® Cell Detachment Solution Innovative Cell Technologies Cat#AT104; RRID: AB_2869384
B-27™ Supplement (50×), Minus Vitamin A Gibco Cat#12587010; RRID: N/A
Bovine Albumin Fraction V (7.5% Solution) Gibco Cat#15260037; RRID: N/A
CHIR99021 Tocris Cat#4423; RRID: N/A
DAPT Cayman Chemical Cat#13197; RRID: N/A
DB-cAMP/Dibutyryl-cAMP Biolog Cat#D 009; RRID: N/A
DirectPCR Lysis Reagent (Cell) Viagen Biotech Cat#302-C; RRID: N/A
DMEM/F-12, GlutaMAX™ Supplement Gibco Cat#10565018; RRID: N/A
DMEM, High Glucose Gibco Cat#11965092; RRID: N/A
DNase Vial (D2) Worthington Biochemical Corporation Cat#LK003170; RRID: N/A
Geltrex™ LDEV-Free, hESC-Qualified, Reduced Growth Factor Basement Membrane Matrix Gibco Cat#A1413302; RRID: N/A
HBSS with 10 mM HEPES, Without Phenol Red STEMCELL Technologies Cat#37150; RRID: N/A
Hibernate A BrainBits Cat#HA; RRID: N/A
Hoechst 33342, Trihydrochloride, Trihydrate - 10 mg/mL Solution in Water Invitrogen Cat#H3570; RRID: N/A
Laminin Mouse Protein, Natural Gibco Cat#23017015; RRID: N/A
L-Ascorbic Acid (White Crystalline Powder) Fisher Scientific Cat#BP351-500; RRID: N/A
LDN193189 Stemgent Cat#04-0074; RRID: N/A
Leibovitz's L-15 Medium Gibco Cat#11415064; RRID: N/A
N-2 Supplement (100×) Gibco Cat#17502048; RRID: N/A
Opti-MEM™ I Reduced Serum Medium Gibco Cat#31985062; RRID: N/A
PBS, pH 7.4 (-CaCl2, -MgCl2) Gibco Cat#10010023; RRID: N/A
PDS Kit, Papain Vial Worthington Biochemical Corporation Cat#LK003176; RRID: N/A
Penicillin-Streptomycin (10,000 U/mL) Gibco Cat#15140122; RRID: N/A
Poly-L-Ornithine Hydrobromide Sigma-Aldrich Cat#P3655; RRID: N/A
Proteinase K Solution (20 mg/mL) Viagen Biotech Cat#501-PK; RRID: N/A
Purmorphamine STEMCELL Technologies Cat#72204; RRID: N/A
Puromycin Dihydrochloride Gibco Cat#A1113803; RRID: N/A
Recombinant Human BDNF Protein R&D Systems Cat#248-BD; RRID: N/A
Recombinant Human GDNF Protein R&D Systems Cat#212-GD; RRID: N/A
SAG Cayman Chemical Cat#11914; RRID: N/A
SB431542 Stemgent Cat#04-0010-10; RRID: N/A
StemFlex™ Medium Gibco Cat#A3349401; RRID: N/A
Thiazovivin Selleck Chemicals Cat#S1459; RRID: N/A
Trypan Blue Solution, 0.4% Gibco Cat#15250061; RRID: N/A
Y-27632 Dihydrochloride Tocris Cat#1254; RRID: N/A

Critical commercial assays

Fontana-Masson Stain Kit (Melanin Stain) Abcam Cat#Ab150669; RRID: N/A
Lipofectamine™ Stem Transfection Reagent Invitrogen Cat#STEM00003; RRID: N/A
P3 Primary Cell 4D-NucleofectorTM X Kit S Lonza Cat#V4XP-3032; RRID: N/A

Experimental models: Cell lines

Human: BJ SiPS-D induced pluripotent stem cells Harvard University Cat#BJ SiPS-D: RRID: CVCL_X741
Human: WA01 (H1) embryonic stem cells WiCell Research Institute Cat#WA01; RRID:
CVCL_9771

Oligonucleotides

Primer: TH-TdTomato Forward:
AGCCCTCTAGCCTCATCCTC
This paper RRID: N/A
Primer: TH-TdTomato Reverse:
GAGCCTCTGGAGCTGCTTG
This paper RRID: N/A
Primer: 5Prime Reverse:
ACATCCCCTGCTTGTTTCAA
This paper RRID: N/A
Primer: 3Prime post-Cre Forward:
TCCCTCAGACCCTTTTAGTCA
This paper RRID: N/A
Primer: ACTB Forward:
CCTGGCACCCAGCACAAT
Pilegaard et al., 2003 RRID: N/A
Primer: ACTB Reverse:
GCCGATCCACACGGAGTACT
Pilegaard et al., 2003 RRID: N/A
Primer: FOXA2 Forward:
GGGGTAGTGCATCACCTGTT
Jo et al., 2016 RRID: N/A
Primer: FOXA2 Reverse:
CCGTTCTCCATCAACAACCT
Jo et al., 2016 RRID: N/A
Primer: GIRK2 (KCNJ6) Forward:
TGCCCAAAGAGGAACTGGAAAT
This paper RRID: N/A
Primer: GIRK2 (KCNJ6) Reverse:
AGTCAACTTCGTAGAACCCGTC
This paper RRID: N/A
Primer: LMX1A Forward:
GCAAAGGGGACTATGAGAAGGA
PrimerBank Cat#291327512c1; RRID: N/A
Primer: LMX1A Reverse:
CGTTTGGGGCGCTTATGGT
PrimerBank Cat#291327512c1; RRID: N/A
Primer: NURR1 (NR4A2) Forward:
CAGGCGTTTTCGAGGAAAT
Kirkeby et al., 2017 RRID: N/A
Primer: NURR1 (NR4A2) Reverse:
GAGACGCGGAGAACTCCTAA
Kirkeby et al., 2017 RRID: N/A

Recombinant DNA

Plasmid: pTAHR TH-p2a-TD:Tomato (floxed selection Puro) Ahfeldt et al., 2020; Addgene Cat#135814; RRID: N/A
CRISPR 1: pTACR TH1-p2aGFP Ahfeldt et al., 2020; Addgene Cat#135815; RRID: N/A
CRISPR 2: pTACR TH2-p2aGFP Ahfeldt et al., 2020; Addgene Cat#135816; RRID: N/A
Plasmid: pCAG-Cre:GFP Matsuda and Cepko, 2007; Addgene Cat#13776; RRID: Addgene_13776

Software and algorithms

CellProfiler https://cellprofiler.org/ RRID:SCR_007358
Fiji https://fiji.sc/ RRID:SCR_002285

Other

4D-NucleofectorTM Core Unit Lonza Cat#AAF-1002B; RRID: N/A
Cell Culture Microplate, 96-well, PS, F-bottom (Chimney Well), μClear®, Black, CELLCOAT®, Poly-L-Lysine, Lid with Condensation Rings, 5 pcs./bag Greiner Cat#655936; RRID: N/A
Corning® 125 mL Disposable Spinner Flask with 70 mm Top Cap and 2 Angled Sidearms, Sterile Corning Cat#3152; RRID: N/A
Corning® Costar® Ultra-Low Attachment Multiple Well Plate MilliporeSigma Cat#CLS3471; RRID: N/A
Countess™ Cell Counting Chamber Slides Invitrogen Cat#C10228; RRID: SCR_019815
Countess™ II FL Automated Cell Counter Invitrogen Cat#AMQAF1000; RRID: N/A
Dropper Bulb, Natural Latex Rubber, 2 mL, 12 per Case Research Products International Cat#142823; RRID: N/A
Falcon® Round-Bottom Tubes with Cell Strainer Cap, 5 mL STEMCELL Technologies Cat#100-0087; RRID: N/A
Fisherbrand™ Disposable Borosilicate Glass Pasteur Pipets Fisher Scientific Cat#13-678-20D; RRID: N/A
Fisherbrand™ Sterile Cell Strainers (70 μm) Fisher Scientific Cat#22-363-548; RRID: N/A
pluriStrainer® 300 μm, 25 pcs. – Sterile (Cell Strainer) pluriSelect Cat#43-50300-03; RRID: N/A
pluriStrainer® 500 μm, 25 pcs. – Sterile (Cell Strainer) pluriSelect Cat#43-50500-03; RRID: N/A
Stirrers, Magnetic, Nine-position, Dura-Mag Chemglass Life Sciences Cat#CLS-4100-09; RRID: N/A
Variable Speed 2D Rocker USA Scientific Cat#2527-2000; RRID: N/A