Table 1.
Species | CSS | CSSA | CSSL | CSA | CSAY | CSP | CGR | CTA | CIM | CPU | CAZ | CPI | CRE | CCR | CCU | CPE | CYU |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Genome(bp) | 157,117 | 157,025 | 157,085 | 157,028 | 157,100 | 157,086 | 157,127 | 156,974 | 156,892 | 157,076 | 157,039 | 156,585 | 156,971 | 156,997 | 156,618 | 157,121 | 156,592 |
CDS (bp) | 80,542 | 80,620 | 80,650 | 79,093 | 79,092 | 80,622 | 80,656 | 79,577 | 79,655 | 80,665 | 80,629 | 79,619 | 76,224 | 79,649 | 79,643 | 80,650 | 79,655 |
Introns (bp) | 15,192 | 15,196 | 15,198 | 17,902 | 17,902 | 15,210 | 15,205 | 16,947 | 16,897 | 15,198 | 15,195 | 16,937 | 15,182 | 16,239 | 16,917 | 15,196 | 16,935 |
IGS (bp) | 49,535 | 49,361 | 49,389 | 48,200 | 48,268 | 49,405 | 49,418 | 48,591 | 48,481 | 49,365 | 49,367 | 48,171 | 53,717 | 49,321 | 48,199 | 49,427 | 48,143 |
tRNA (bp) | 2802 | 2802 | 2802 | 2789 | 2790 | 2802 | 2802 | 2813 | 2813 | 2802 | 2802 | 2812 | 2802 | 2742 | 2813 | 2802 | 2813 |
rRNA (bp) | 9046 | 9046 | 9046 | 9044 | 9048 | 9047 | 9046 | 9046 | 9046 | 9046 | 9046 | 9046 | 9046 | 9046 | 9046 | 9046 | 9046 |
Genes | 115 | 115 | 115 | 113 | 113 | 115 | 115 | 115 | 115 | 115 | 115 | 115 | 115 | 114 | 115 | 115 | 115 |
CDS genes | 81 | 81 | 81 | 79 | 79 | 81 | 81 | 81 | 81 | 81 | 81 | 81 | 81 | 81 | 81 | 81 | 81 |
tRNA genes | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 30 | 29 | 30 | 30 | 30 |
Introns | 18 | 18 | 18 | 22 | 22 | 18 | 18 | 21 | 21 | 18 | 18 | 21 | 18 | 20 | 21 | 18 | 21 |
Genome GC | 37.3 | 37.3 | 37.29 | 37.3 | 37.29 | 37.32 | 37.29 | 37.32 | 37.33 | 37.3 | 37.3 | 37.34 | 37.31 | 37.3 | 37.31 | 37.29 | 37.33 |
CDS GC | 37.58 | 37.57 | 37.56 | 37.47 | 37.47 | 37.58 | 37.56 | 37.57 | 37.54 | 37.57 | 37.56 | 37.56 | 37.54 | 37.54 | 37.56 | 37.56 | 37.54 |
Introns GC | 36.41 | 36.38 | 36.38 | 37.91 | 37.91 | 36.42 | 36.39 | 37.25 | 37.28 | 36.42 | 36.41 | 37.22 | 36.4 | 37.54 | 37.25 | 36.41 | 37.25 |
IGS GC | 32.93 | 32.94 | 32.94 | 32.48 | 32.46 | 32.97 | 32.94 | 32.68 | 32.72 | 32.93 | 32.95 | 32.71 | 33.39 | 32.64 | 32.63 | 32.92 | 32.68 |
tRNA GC | 52.86 | 52.86 | 52.86 | 52.99 | 52.97 | 52.86 | 52.86 | 52.86 | 52.9 | 52.89 | 52.86 | 52.92 | 52.86 | 52.88 | 52.9 | 52.86 | 52.9 |
rRNA GC | 55.39 | 55.41 | 55.41 | 55.40 | 55.39 | 55.41 | 55.41 | 55.38 | 55.41 | 55.42 | 55.39 | 55.36 | 55.34 | 55.41 | 55.38 | 55.39 | 55.41 |
Gene losses |
orf42, ycf1, ycf15 |
orf42, ycf1, ycf15 |
orf42, ycf1 |
orf42, ycf1 |
orf42, ycf1 |
orf42, ycf1, trnG |
orf42, ycf1 |
orf42, ycf1 |
|||||||||
Intron losses | rps12 | rps12 | rps12 | rps12 | rps12 | rps12 | rps12 | rps12 | rps12 |
CSS: Camellia sinensis var. sinensis, CSSA: Camellia sinensis var. sinensis cv. Anhua, CSSL: Camellia sinensis var. sinensis cv. Longjing43, CSA: Camellia sinensis var. assamica, CSAY: Camellia sinensis var. assamica cv. Yunkang10, CSP: Camellia sinensis var. pubilimba, CSP; Camellia grandibracteata, CTA: Camellia taliensis, CIM: Camellia impressinervis, CPU: Camellia pubicosta, CAZ: Camellia azalea, CPI: Camellia pitardii, CRE: Camellia reticulata, CCR: Camellia crapnelliana, CCU: Camellia cuspidate, CPE: Camellia petelotii, CYU: Camellia yunnanensis