Table 3.

SV statistics of the HD genome vs. three tea plant genomes

	HD vs. SCZ	HD vs. LJ43	HD vs. DASZ
No. of InDels (50–500 bp)	8174	8351	3718
No. of InDels (500–10,000 bp)	4539	5132	2023
No. of InDels (10,000–50,000 bp)	456	400	246
No. of InDels (50,000–100,000 bp)	21	19	9
No. of tandem expansion/contraction	5209	4998	3653
No. of repeat expansion/contraction	26,905	25,458	17,105
Size of InDels (Mb)	24.21	24.17	11.64
Size of tandem expansion/contraction (Mb)	75.76	41.46	46.79
Size of repeat expansion/contraction (Mb)	280.36	254.62	235.65
Total SV number	45,304	44,358	26,754
Total SV size (Mb)	380.32	320.25	294.08
Gene count	14,347	13,119	15,222