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. 2021 May 1;8:92. doi: 10.1038/s41438-021-00513-2

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — WGCNA of carbohydrate metabolic process and transcription factor genes from two productions. a Cluster dendrogram showing different modules (by colour) of co-expressed genes as identified by the Dinamic Tree Cut algorithm and by merging modules sharing a correlation above 0.75. The grey module included genes that did not belong to any other modules. b Hierarchical clustering dendrogram (upper panel) and correlation heatmap (lower panel) of module eigengenes (ME) to examine higher-order relationships between the modules. Correlations and corresponding p-values in parenthesis are in coloured boxes. c Heatmap of module-carbohydrates correlations. Acronyms of sugars are in Fig. 1d legend. d Scatterplots of module membership vs genes significance in the blue and turquoise modules. e Cytoscape representation of the module of genes of interest (MGI) within blue and turquoise modules. Edges with weight above a threshold of 0.2 are shown. The transcript numbers and annotations (listed in Table S8) are above the circles (transcription factors) and squares (carbohydrate genes). TF putatively binding 1-SST are in red