Table 3.
Endive candidate TFs targeting 1-SST by scoring binding sites in promoters of chicory and lettuce orthologs
| M | Endive transcription factors | Arabidopsis best hits | Binding sites n. | ||||
|---|---|---|---|---|---|---|---|
| Transcript | Annotation | Type | AGI codes | Description | Chicory | Lettuce | |
| T | CICEN007985.1 | GATA9 | GATA | AT4G32890.1 | GATA transcription factor 9 | 36 | 22 |
| T | CICEN005406.1 | PIF1 | bHLH | AT2G20180.7 | Phytochrome interacting factor 1 | 4 | 2 |
| T | CICEN010173.1 | RAP2.7 | AP2 | AT2G28550.3 | Related to AP2.7 | 1 | 1 |
| T | CICEN016071.1 | GATA11 | GATA | AT1G08010.3 | GATA transcription factor 11 | 3 | 4 |
| T | CICEN019145.1 | CDF3 | DOF | AT3G47500.1 | Cycling DOF factor 3 | 19 | 17 |
| T | CICEN025406.2 | DOF3.4 | DOF | AT3G50410.1 | DOF protein 3.4 | 19 | 15 |
| T | CICEN013177.1 | DEAR3 | ERF | AT2G23340.1 | DREB and EAR motif protein 3 | 2 | 4 |
| T | CICEN020509.1 | GATA15 | GATA | AT3G06740.1 | GATA transcription factor 15 | 35 | 20 |
| B | CICEN031646.1 | STZ | C2H2 | AT1G27730.1 | Salt tolerance zinc finger | 3 | 3 |
| B | CICEN030208.1 | WRKY6 | WRKY | AT1G62300.1 | WRKY DNA-binding protein 6 | 23 | 8 |
| B | CICEN011950.1 | WRKY75 | WRKY | AT5G13080.1 | WRKY DNA-binding protein 75 | 10 | 4 |
NCBI acc. n. are in “Materials and methods”
M module, T turquoise, B blue