Table 1.
Summary of total variations in wild-type (WT) and Cas9-edited plants
| Description plants | Plants vs. Ref | Plants vs. WT | Private variations | |||
|---|---|---|---|---|---|---|
| Indel | SNP | Indel | SNP | Indel | SNP | |
| WT_1 | 617915 | 7295904 | – | – | – | – |
| WT_2 | 639742 | 7463331 | – | – | – | – |
| WT_3 | 638472 | 7445663 | – | – | – | – |
| B36_45 | 686411 | 7497964 | 172637 | 946686 | 49619 | 265170 |
| W52_37 | 641658 | 7440800 | 127884 | 889522 | 29786 | 211379 |
| W52_38 | 716760 | 7698041 | 202986 | 1146763 | 55020 | 264713 |
| W52_42 | 621999 | 7308740 | 108225 | 757462 | 26391 | 202008 |
| W52_51 | 718423 | 7724670 | 204649 | 1173392 | 55414 | 267238 |
| W52_52 | 701625 | 7722911 | 187851 | 1171633 | 47673 | 272397 |
| W52_60 | 654096 | 7542322 | 140322 | 991044 | 32711 | 232362 |
The ‘Plants vs. Ref’ column represents the variation (insertions/deletions (indels) and single nucleotide polymorphisms (SNPs) of each grapevine line compared to the reference genome (PN40024). ‘Plants vs. WT’ represents the variation of each Cas9-edited grape line compared to the core variations found in the three WT plants. The ‘Private variations’ indicate the variations only appearing in the Cas9-edited transgenic grapevine lines compared to the three WT plants