Table 1.
(A) | |||||
---|---|---|---|---|---|
SARS-CoV-2 | Biomeme SARS-CoV-2 test | SARS-CoV-2 (estimated copies per reaction) | Precision Biomonitoring TripleLock SARS-CoV-2 test | ||
Target | Ct value | Target | Ct value | ||
Undiluted | Orf1ab gene | 11.24 | 15 × 108 | 5′UTR gene | 11.40 |
S gene | 10.13 | E gene | 10.24 | ||
10–1 | Orf1ab gene | 14.31 | 15 × 107 | 5′UTR gene | 14.40 |
S gene | 14.48 | E gene | 12.92 | ||
10–2 | Orf1ab gene | 17.29 | 15 × 106 | 5′UTR gene | 17.68 |
S gene | 17.45 | E gene | 16.06 | ||
10–3 | Orf1ab gene | 21.31 | 15 × 105 | 5′UTR gene | 21.01 |
S gene | 21.48 | E gene | 19.47 | ||
10–4 | Orf1ab gene | 24.24 | 15 × 104 | 5′UTR gene | 24.28 |
S gene | 24.43 | E gene | 22.47 | ||
10–5 | Orf1ab gene | 27.96 | 15 × 103 | 5′UTR gene | 27.76 |
S gene | 28.12 | E gene | 26.26 | ||
10–6 | Orf1ab gene | 31.39 | 15 × 102 | 5′UTR gene | 31.39 |
S gene | 30.99 | E gene | 29.23 | ||
10–7 | Orf1ab gene | 32.65 | 15 × 101 | 5′UTR gene | 33.45 |
S gene | 33.99 | E gene | 32.63 | ||
10–8 | Orf1ab gene | 34.69 | 15 × 100 | 5′UTR gene | 35.76 |
S gene | 33.82 | E gene | 34.14 | ||
10–9 | Orf1ab gene | – | 15 × 10–1 | 5′UTR gene | – |
S gene | – | E gene | – |
(B) | |||||
---|---|---|---|---|---|
SARS-CoV-2 | Target | Ct value | |||
Biomeme | E_Sarbeco | ||||
Undiluted | Orf1ab gene | 9.47 | 13.36 | ||
S gene | 9.84 | ||||
10–1 | Orf1ab gene | 12.09 | 16.47 | ||
S gene | 12.31 | ||||
10–2 | Orf1ab gene | 16.73 | 21.30 | ||
S gene | 16.94 | ||||
10–3 | Orf1ab gene | 20.49 | 25.00 | ||
S gene | 20.61 | ||||
10–4 | Orf1ab gene | 24.78 | 28.66 | ||
S gene | 24.61 | ||||
10–5 | Orf1ab gene | 28.36 | 31.99 | ||
S gene | 27.58 | ||||
10–6 | Orf1ab gene | 31.78 | 34.89 | ||
S gene | 30.87 | ||||
10–7 | Orf1ab gene | 32.92 | 37.14 | ||
S gene | 32.91 | ||||
NTC | Orf1ab gene | 0.00 | 0.00 | ||
S gene | 0.00 |
The M1 Sample Prep Cartridge Kit for RNA 2.0 was used to extract RNA from serial dilutions of cell culture-amplified SARS-CoV-2. Following the extractions, 20 µl of RNA from each dilution was used to set up the Biomeme and Precision Biomonitoring SARS-CoV-2 Test on Franklin three9 (A). Because the same extracted RNA from the dilutions were used for both assays, there was no spiking of RPC during extraction as required by the Biomeme assay, this was done to avoid interfering with the E gene of the Precision Biomitoring assay as both RPC and E gene are on the same channel (TexasRedX) on Franklin three9; as a result, all internal controls were excluded from the runs and analysis. In addition, the detection of the full SARS-CoV-2 targets (even in the absence of the internal controls) in both assays means that the tests are positive/valid. In another experiment, MagMAX™ CORE Nucleic Acid Purification Kit-extracted RNA from cell culture-amplified SARS-CoV-2 dilutions was used to set up Biomeme and E_Sarbeco SARS-CoV-2 assays to compare their sensitivities. The Biomeme SARS-CoV-2 assay was run on Franklin three9 while the E_Sarbeco assay was run on ABI 7500 (B).