Table 1.
Comparison of the main characteristics of selected clinical genetics workflows.
| Workflow characteristic | HeartCare | All of Us | eMERGEa | INSIGHTb | Rapid NICUc | |
| Genetic test type | Panel | Panel | Panel | WESd | WGSe | |
| Approximate positive rate, % | 8 | ~2-3 | 3 | >40 | >30 | |
| Up-front phenotype term collection | Main disease areas | None | Main disease areas | Detailed | —f | |
| Return of results |
|
|
|
|
|
|
|
|
Return of results by clinician | Yes | No | No | Yes | Yes |
| Return of results by genetic counselor | Partial | Yes | Yes | Partial | Yes | |
| Report characteristics |
|
|
|
|
|
|
|
|
Form of report is easily EHRg-integratable | Yes | Somewhat | Yes | Yes | Yes |
|
|
Report is focused on one disease area | Yes | No | No | Yes | No |
|
|
Report contains pharmacogenomics | Yes | Yes | Yes | Yes | Yes |
|
|
Report contains polygenic risk score | Yes | No | No | No | No |
| Usage of genetic information |
|
|
|
|
|
|
|
|
Reanalysis of genetic information desired | Yes | Yes | Yes | Yes | Sometimes |
|
|
Reanalysis enables future diagnosis on other diseases | No | Yes | Yes | Yes | Yes |
|
|
Supports genotype-phenotype analysis | Yes | Yes | Yes | Yes | Yes |
| Generalizability |
|
|
|
|
|
|
|
|
Overall reporting framework generalizable to other diseases | Yes | Yes | Yes | Yes | Yes |
|
|
Generalization requires development of specialty-specific systems | No | No | No | No | No |
aeMERGE: Electronic Medical Records and Genomics.
bINSIGHT: Implementation Science for Genomic Health Translation.
cNICU: neonatal intensive care unit.
dWES: whole exome sequencing.
eWGS: whole genome sequencing.
fProject is in development and data are not available.
gEHR: electronic health record.