TABLE 1.
Strain | Species | Sampling site | Sample | Oxazolidinone resistance genes |
MIC (mg/liter) of:a |
Typing results |
Estimated plasmid size(s) (kb) from S1 PFGE and hybridizationb |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
optrA | cfr | poxtA | FFC | CHL | LZD | TZD | TE | VAN | SmaI PFGE | MLST | optrA | poxtA | ||||
EN3 | E. faecalis | EN | Sediment | + | − | − | 128 | 128 | 4 | 4 | 128 | 1 | ST585 | 20, 140 | ||
EF3 | E. faecium | EF | Sediment | − | − | + | 64 | 16 | 8 | 2 | 128 | 1 | C | ST1710 | 30, c | |
ES2 | E. faecium | ES | Sediment | − | − | + | 32 | 16 | 8 | 2 | 128 | 1 | C1 | ST1710 | 15, 30, c | |
TF3 | E. faecium | TF | Sediment | − | − | + | 64 | 32 | 2 | 2 | >128 | 0.5 | B | ST1711 | 30, 50, 80, c | |
GE5 | E. hirae | GEN | Sediment | − | − | + | 64 | 64 | 4 | 2 | 128 | 0.5 | A1 | 25, 100 | ||
GE2 | E. hirae | GES | Zooplankton | − | − | + | 64 | 64 | 8 | 3 | 128 | 0.5 | A | 25, 100 |
FFC, florfenicol; CHL, chloramphenicol; LZD, linezolid; TZD, tedizolid; TE, tetracycline; VAN, vancomycin. MIC resistance breakpoints (EUCAST or CLSI) were as follows: florfenicol, not applicable; chloramphenicol, resistant at ≥32mg/liter; linezolid, resistant at >4 mg/liter; tedizolid, susceptible at ≤0.5 mg/liter (only for E. faecalis); tetracycline, resistant at ≥16 mg/liter; vancomycin, resistant at >4 mg/liter.
c, chromosome.