REAGENT or RESOURCE	SOURCE	IDENTIFIER
Chemicals, peptides, and recombinant proteins
ACK buffer 10x500ml	Quality Biological INC	118-156-101
CryoStor Cs10	HemaCare	210102
Neutrophil isolation kit (StemCell)	STEMCELL	19666
SepMate 15ml tubes (100/pk)	STEMCELL	85415
SepMate 50ml tubes (500/cs)	STEMCELL	85460
TCL buffer 125ml	QIAGEN	1031576
96 round bottom plates	WestNet	3788
Deposited data
scRNA-sequencing data PBMCs	Wilk et al. (2020)16 COVID-19 atlas	Database: https://www.covid19cellatlas.org/#wilk20
scRNA-sequencing data PBMCs	Lee et al. (2020)8	GEO accession - GSE149689
scRNA-sequencing data PBMCs	Arunachalam et al. (2020)4	GEO accession - GSE155673
scRNA-sequencing data PBMCs	Schulte-Schrepping et al. (2020)17	EGA accession - EGAS00001004571
scRNA-sequencing data BAL	Bost et al. (2020)36	GEO accession - GSE145926 and GSE149443
scRNA-sequencing data BAL	Chua et al. (2020)38	Database: https://figshare.com/articles/COVID-19_severity_correlates_with_airway_epithelium-immune_cell_interactions_identified_by_single-cell_analysis/12436517
scRNA-sequencing data heart	Tucker et al. (2020)37	Broad Institute’s Single Cell Portal study - ID SCP498
scRNA-sequencing data kidney	Menon et al. (2020)59	GEO accession - GSE140989
scRNA-sequencing data liver	MacParland et al. (2018)60	GEO accession number - GSE115469
scRNA-sequencing data pancreas	Baron et al. (2016)61	expression matrix obtained from the Itai Yanai lab
Olink proteomic dataset	This study	Mendeley Data: https://data.mendeley.com/datasets/nf853r8xsj/1
SomaScan proteomic dataset	This study	Mendeley Data: https://data.mendeley.com/datasets/nf853r8xsj/1
Experimental models: Cell lines
293T ACE2 TMPRSS2	This paper	N/A
Recombinant DNA
pCMV-SARS2ΔC-gp41	This paper	N/A
psPAX2	Addgene	RRID: Addgene_12260
pCMV-VSV-G	Addgene	RRID: Addgene_8454
pTRIP-SFFV-GFP-NLS	Addgene	RRID: Addgene_86677
pTRIP-SFFV-Hygro-2A-TMPRSS2	This paper	N/A
Software and algorithms
FlowJo v10.7.1	BD	N/A
RStudio	Database: https://www.rstudio.com/	v1.4
R	Database: https://cran.r-project.org/	v4.0.4