TABLE 1.
Genes correlated with different RDQMA cow phenotypes
| Phenotype/characteristica | Positive state | Alternative state |
|---|---|---|
| Source | Type 1 polyketide_synthase MAP_RS09140 | C-hypotheticalb |
| Environment | 0 | 0 |
| LactIndex | 0 | 0 |
| SeroStatus | 0 | PPE32; MAP_RS07720 |
| ODcat | 0 | 0 |
| STpos | 0 | MCE family protein; MAP_RS09405; type 1 polyketide synthase MAP_RS09140 |
| AnteFC | Nonribosomal peptide synthase (NRPS); MAP_RS07215 | GTP-binding translation elongation factor TypA; MAP_RS13345 |
| FFS < 3 | mmps3; MAP_RS09845; type 1 polyketide_synthase MAP_RS09140 | SDR family NAD(P)-dependent oxidoreductase; MAP_RS06960 |
| FecalShedGroup | 0 | PPE32; MAP_RS07720; dimodular nonribosomal peptide synthase (dhbF); MAP_RS07215 |
| Prog | 0 | 0 |
a
See Table 2 for definitions of parameters.
b
C-hypothetical refers to conserved hypothetical (conserved across lineages other than MAP).