Table 3.
Upregulated differentially expressed genes specifically in HPV-negative cervical cancer
| Gene name | LogFC | LogCPM | p value | FDR |
|---|---|---|---|---|
| PRAME | 7.3191 | 7.0601 | 0.0002 | 0.0113 |
| HMGA2 | 6.2526 | 5.0822 | 0.0013 | 0.0483 |
| MT1G | 5.2074 | 4.5062 | 0.0009 | 0.0365 |
| SBK1 | 4.5674 | 5.7858 | 0.0003 | 0.0143 |
| ETV4 | 3.6619 | 6.1276 | 0.0005 | 0.0243 |
| SLC7A5 | 3.5818 | 8.3032 | 0.0012 | 0.0464 |
| MEX3A | 3.5549 | 5.8684 | 0.0005 | 0.0232 |
| PLS1 | 3.1988 | 5.5935 | 0.0010 | 0.0411 |
| TM7SF2 | 2.8849 | 5.6680 | 0.0007 | 0.0313 |
| RHPN1 | 2.8480 | 5.5456 | 0.0009 | 0.0377 |
| PYCR1 | 2.5412 | 6.7111 | 0.0012 | 0.0463 |
| SLC19A1 | 2.2630 | 5.0747 | 0.0002 | 0.0088 |
| CHD7 | 2.1742 | 5.6171 | 0.0010 | 0.0410 |
| TTYH3 | 2.0264 | 7.2369 | 0.0002 | 0.0101 |
| HSPH1 | 1.7805 | 7.6452 | 0.0010 | 0.0402 |
| SLC25A13 | 1.7218 | 5.6570 | 0.0007 | 0.0299 |
| NIPSNAP1 | 1.7116 | 6.8293 | 0.0013 | 0.0492 |
FDR, false discovery rate; LogCPM, log counts per million, which can be understood as measuring expression level; LogFC, log fold change, which is the log difference between your groups