FIG 2.

Strain-typing of patient-specific Achromobacter in the context of a sequence-based phylogeny of the genus. (A) Maximum-likelihood tree based on sequences of 10 single-copy genes used by mOTUs. Colors on the right of the tree depict species assignments according to NCBI and GTDB taxonomies and apply to panels B and C as well. Blue circles indicate branch confidence values (≥90) based on 100 bootstraps of the tree. (B) Maximum-likelihood tree based on sequences of seven housekeeping genes from the Achromobacter MLST database. (C) UPGMA clustering of pairwise average nucleotide identities of the comprising Achromobacter genomes.