TABLE 1.
Information regarding the genome-matching network nodesa
| Genome (matching network node[s]) |
Relevant gene(s)/pathway(s) |
13C enrichment of genome in the rhizosphere compared to bulk |
Atom% excess at wk 6 |
Atom% excess at wk 9 |
|---|---|---|---|---|
|
Rhizobium_leguminosarum_59_9 (OTUs 175932, 61972, 42846, 64784) |
Genes involved in modulating plant hormones | Yes | 58 | 39.2 |
|
Mesorhizobium_63_15 (OTU 13989) |
Genes involved in modulating plant hormones | Yes | 55.1 | 43.5 |
| Type VI secretion system | ||||
|
Acidobacteria_68_21 (OTU 2124) |
BGCs | No | 0 | 0 |
| Type IV secretion system | ||||
| CRISPR-Cas system | ||||
| Insecticidal proteins | ||||
| Wide array of CAZy genes targeting different substrates | ||||
| Highly versatile metabolism | ||||
|
Acidobacteria_60_12 (OTU 7765) |
18 CAZy genes targeting fungal biomass compounds | Yes | 42.5 | 29.9 |
| BGCs | ||||
| Antibiotic resistance modules | ||||
| Reactive oxygen species protectants | ||||
|
Actinobacteria_70_13 (OTU 2178) |
Chitin deacetylase | Yes | 62.4 | 24.4 |
| Genes likely used in adhesion to biological material | ||||
a
Data from reference 49. BGCs, biosynthetic gene clusters.