Table 2.
Datasets and long-read assemblies generated for the benchmark. Coverages were computed using a genome size of 120 Mb, 3 Gb, 1.6 Gb and 56 Mb for Arabidopsis thaliana, Homo sapiens, Solanum tuberosum and the metagenome sample (sum of genome sizes), respectively
| Arabidopsis thaliana Col-0 | Homo sapiens | Synthetic sequence | Solanum tuberosum L. RH89–039-16 | Metagenomic sample | ||
|---|---|---|---|---|---|---|
| Illumina | Accession number | SRR12136403 | ERR194147 | NA | PRJNA573826 | SRX4901583 |
| Read length (bp) | 2 × 150 | 2 × 101 | 2 × 150 | 2 × 250 | 2 × 151 | |
| Coverage | 176 X | 30 X | 50 X | 47 X | 1150 X | |
| Nanopore | Accession number | SRR12136402 | - | - | PRJNA573826 | SRX5161985 SRX4901586 |
| Reads N50 (bp) | 18 827 | - | - | 25 280 | 22 660 | |
| Coverage | 95 X | - | - | 75 X | 83 X | |
| Accession number | - | - | - | SRX7922852 | - | |
| PACBIO HiFi | Reads N50 (bp) | - | - | - | 10 000 | - |
| Coverage | - | - | - | 14 X | - | |
| Assembly | Number of contigs | 238 | 1,172 | 1 | 11,070 | 107 |
| Cumulative size | 119 992 853 | 2 818 937 673 | 102 000 | 1 332 417 447 | 49 379 539 | |
| Contig N50 (bp) | 14 841 396 | 11 821 944 | 102 000 | 440 422 | 3 584 230 |