TABLE 1.

Smallest SNV and gene content distances within and between lineages involved in patient-to-patient transmission^a

Case	Patient 1	Patient 2	Clone type	SNV distance			Gene distance
				Between patients	Within patient 1	Within patient 2	Between patients	Within patient 1	Within patient 2
1	P9603	P9503	AX01DK01	69–368	182–323	117–275	11–115	94–124	9–15
2	P1705	P6004	AX01DK01	86–201	193–310		19–42	33–39
3	P3704	P4203	AX01DK01	213–883	201–297		43–133	121–162
4	P1903	P7703	AX01DK01	234–347	341	38	25–69	54	45
5	P5303	P3704	AX01DK01	243–672	346–553	201–297	41–185	4–54	121–162
6	P8703	P1705	AX01DK01	345–533		193–310	22–53		33–39
7	P3403	P5303	AX01DK01	393–469	653	346–553	16–71	35	4–54
8	P5604	P1903	AX01DK01	449–1,060	594	341	17–77	32	54
9	P3704	P4703	AX01DK01	510–631	201–297		41–137	121–162
10	P6004	P6604	AX02DK05	12			6
11	P0603	P6203	AX02DK07	80–93	29		372–411	77
12	P0603	P0802	AX02DK07	115–184	29	92	410–614	77	16
13	P0703	P6402	AX03DK02	32			198
14	P6203	P6604	AX03DK15	50			307
15	P6604	P6804	AX03DK15	390			886
16	P6203	P7603	AX03DK16	151–174		9–32	392–401		16–25

^aSNV distance is the number of SNVs that are different between samples; gene distance is the number of genes that are different between samples.