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Well-studied RNA structural elements in the HCV genome
| RNA structural element (reference[s]) | Sequence interval (HCV JC1) | Genomic domain |
|---|---|---|
| IRES (65) | 1–350 | 5′ UTR |
| SL388 (19, 66), SL427 (19, 67) | 417–488 | Core |
| SL588, SL669 (19, 67) | 588–749 | Core |
| J750 (19, 23, 67) | 751–824 | Core |
| SL6038 (19) | 6038–6186 | NS4B |
| J7880 (23) | 7880–7998 | NS5B |
| SL8670 (23) | 8655–9716 | NS5B |
| SL9074 (68, 69), SL9198 (70) | 9103–9257 | NS5B |
