TABLE 1.
Classifier | Version | Classifier type | Base type | References |
MCP | 2.0.15 | Genome | DNA | This study |
Ganon | 0.1.5 | k-mer (k = 19) | DNA | Piro et al., 2020 |
Kraken | 2.0.7 | k-mer (k = 35) | DNA | Wood et al., 2019 |
Bracken | 2.5.0 | k-mer (k = 35) | DNA | Lu et al., 2017 |
MetaCache | 0.9.0 | k-mer (k = 16) | DNA | Müller et al., 2017 |
Centrifuge | 1.0.4 | Genome | DNA | Kim et al., 2016 |
DIAMOND-LCA | 0.9.29 | Protein | Protein | Buchfink et al., 2015 |
Kaiju | 1.7.2 | Protein | protein | Menzel et al., 2016 |
mOTUs | 2.5.1 | Marker | DNA | Milanese et al., 2019 |
MetaPhlAn# | 2.96.1 | Marker | DNA | Truong et al., 2015 |
#Evaluated using MetaPhlAn database v296 downloaded on February 24, 2020.