Table 2.
Average GC-content and coverage breadth of sequenced samples
| Reads | Sample name (#) | Average of mean coverage (X) | Average GC content | Average coverage breadth | ||
|---|---|---|---|---|---|---|
| Whole genome | Genic regions | Intergenic regions | ||||
| All mappable reads | EOM (13) | 37.54 | 21.4% | 57.9% | 78.0% | 27.8% |
| LOM (10) | 43.10 | 22.4% | 57.3% | 79.0% | 25.0% | |
| COM (2) | 9.54 | 20.7% | 48.0% | 67.7% | 18.5% | |
| ENM (1) | 1.47 | 25.0% | 23.0% | 34.4% | 6.1% | |
| LNM (1) | 20.43 | 24.3% | 47.4% | 67.9% | 16.9% | |
| Dd2_bulk (1) | 75.83 | 18.9% | 96.1% | 97.0% | 94.9% | |
| Clinical_bulk (1) | 0.03 | 19.7% | 0.3% | 0.3% | 0.2% | |
| Down-sampled* | EOM (13) | 1.66 | 21.4% | 30.9% | 47.2% | 6.7% |
| LOM (10) | 1.69 | 22.4% | 32.1% | 49.8% | 5.8% | |
| COM (2) | 1.66 | 20.8% | 31.1% | 47.0% | 7.5% | |
| ENM (1) | 1.33 | 25.2% | 21.7% | 32.9% | 5.0% | |
| LNM (1) | 1.62 | 24.3% | 26.2% | 40.3% | 5.1% | |
| Dd2_bulk (1) | 1.85 | 18.8% | 76.8% | 80.6% | 71.2% | |
*Down-sampling is to 300,000 mappable reads based on the sample with the lowest number of mappable reads (ENM)