High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

. Author manuscript; available in PMC: 2021 May 4.

Published in final edited form as: Cell Rep. 2021 Apr 6;35(1):108954. doi: 10.1016/j.celrep.2021.108954

KEY RESOURCES TABLE

Reagent or resource	Source	Identifier

Deposited data
Simultaneous in vivo whole-cell patch-clamp recording and voltage imaging (Voltron in mouse L1)	This paper	https://dx.doi.org/10.25378/janelia.c.5325254
zebrafish spinal cord voltage imaging (zArchon1)	This paper	https://doi.org/10.6084/m9.figshare.14153339

Experimental models: Organisms/strains

Mouse: NDNF-Cre: B6.Cg-Ndnf^{tm1.1(folA/cre)Hze}/J	Jackson Laboratory	Stock #028536
Zebrafish: Tg(vGlut2a:Gal4), Tg(UAS:zArchon-GFP)	vGlut2a:Gal4: National BioResource Project, Zebrafish, Core Institution, Japan; UAS:zArchon-GFP: Cohen lab	N/A

Recombinant DNA

paQuasAr3-s	Addgene	107703, 107704
SomArchon1	Addgene	126943, 126512
Voltron	Addgene	119036
zArchon1	Addgene	108427

Software and algorithms

SGPMD-NMF	This paper	https://github.com/adamcohenlab/invivo-imaging
TreFiDe	Buchanan et al., 2019	https://github.com/ikinsella/trefide
Python	Python Software Foundation	https://www.python.org/
MATLAB	MathWorks	https://www.mathworks.com/products/matlab.html