TABLE 3.
PdeL-regulated loci identified by RNA-seq
| Gene ID | Gene or operon | Function and/or description | Fold changea | P value | Reference(s) |
|---|---|---|---|---|---|
| b1937 | fliE | Flagellar basal body and motor assembly proteins; class II locus activated by FlhDC and repressed by CsgD | −2.4 | 5.9E−03 | 68 |
| b1938 | fliF | −5.4 | 1.2E−08 | ||
| b1939 | fliG | −4.2 | 2.6E−06 | ||
| b1940 | fliH | −2.8 | 1.1E−03 | ||
| b1941 | fliI | −2.9 | 3.9E−04 | ||
| b1943 | fliK | −2.5 | 3.8E−03 | ||
| b1044 | ymdA | Uncharacterized; overexpression inhibits biofilm formation; class II locus activated by FlhDC | −2.5 | 3.5E−03 | 30, 69 |
| b3784 | rfe | Enterobacterial common antigen synthesis | −2.5 | 7.7E−04 | 18 |
| b3785 | wzzE | −2.3 | 3.6E−03 | ||
| b3791 | wecE | −2.1 | 7.9E−03 | ||
| b4466 | yghJ-sslE | Secreted mucin-degrading metalloprotease | 4.7 | 2.2E−13 | 15, 17 |
| b1541 | ydfZ | Putative selenoprotein | 2.6 | 2.4E−03 | 32 |
| b2579 | grcA | Stress-induced glycyl radical protein and alternate pyruvate formate-lyase subunit | 2.6 | 2.9E−03 | 70 |
| b2911 | ssrS | 6S RNA | 2.5 | 6.2E−04 | 19 |
| b4595 | yciY | Uncharacterized | 2.4 | 5.6E−03 | 32 |
a
Values of differential RNA levels of T2057/pKESL207 (Ptac pdeL3×FLAG) versus T2057/pKESK22 (control). The complete RNA-seq data set has been compiled in Table S1 in the supplemental material.