Table 2.
Genes annotated in the Chinese Spring v2.0 reference sequence 690 kbp interval of qYDH.3BL
| Gene ID | Position (bp) | Putative function based on rice orthologues | E-value | Putative function based on Brachypodium orthologues | E-value | Gene expression | |
|---|---|---|---|---|---|---|---|
| I | TraesCS3B02G570900 | 802 845 950–802 848 503 | LOC_Os10g33910.1_ mitochondrial import inner membrane translocase subunit Tim16 | 4.1 e-42 | Bradi2g61480_mitochondrial import inner membrane translocase subunit TIM16 | 1.7 e-55 | Supplementary Fig. S8 |
| II | TraesCS3B02G571000 | 802 848 874–802 852 363 | LOC_OS02g17280_Gamma-secretase subunit APH-1B | 4.3 e-131 | Bradi3g10110_endopeptidase activity | 8.5 e- 135 | Supplementary Fig. S8 |
| III | TraesCS3B02G851200LC | 803 363 524–803 364 407 | – | – | – | – | Supplementary Fig. S9 |
| IV | TraesCS3B02G572500 | 803 511 461–803 513 157 | LOC_Os11g14410_ Polygalacturonase | 8.5 e-142 | Bradi2g57427_ Polygalacturonase/Pectinase | 8.2 e- 87 | Supplementary Fig. S8 |
| V | TraesCS3B02G572600 | 803 523 701–803 525 213 | LOC_Os01g72720_ expressed protein | 8.9 e-11 | Bradi2g61275_PF03478 Protein of unknown function | 4.8 e-56 | Supplementary Fig. S8 |
| VI | TraesCS3B02G572700 | 803 540 158–803 540 583 | – | – | Bradi1g36100_Glycosyl hydrolase, subfamily GH 28 | 1.6 e-22 | Supplementary Fig. S8 |
| VII | TraesCS3B02G851300LC | 803 580 461–803 581 032 | LOC_Os01g72620_ expressed protein | 1.6 e-22 | – | – | Supplementary Fig. S9 |
| VIII | TraesCS3B02G572800 | 803 583 095–803 583 731 | LOC_Os01g59540_GRF zinc finger family protein | 1.1 e-4 | Bradi5g21617 | 1.5 e-24 | Supplementary Fig. S8 |
| IX | TraesCS3B02G851400LC | 803 586 310–803 587 263 | LOC_Os07g42000_expressed protein | 1.8 e-14 | – | – | Supplementary Fig. S9 |
| X | TraesCS3B02G572900 | 803 628 595– 803 630 088 | LOC_Os01g03170_seven in absentia protein family protein | 3.3 e-34 | Bradi1g27970_ubiquitin-protein ligase activity | 6 e-57 | Supplementary Fig. S8 |
| XI | TraesCS3B02G851500LC | 803 715 648–803 716 915 | – | – | – | – | Supplementary Fig. S9 |
| XII | TraesCS3B02G573000HC | 804 008 796–804 009 926 | LOC_Os01g03170_seven in absentia protein family protein | 2.7 e-31 | Bradi1g27970_ubiquitin-protein ligase activity | 1.7 e-48 | Supplementary Fig. S8 |
The putative function of each gene was retrieved by homology with rice and Brachypodium. Gene expression information was retrieved from http://wheat-expression.com using RefSeq1.1. HC, high confidence; LC, low confidence.