|
Experimental Models
|
|
|
| Human: A549 cells |
ATCC |
N/A |
| Human: Cas9‐stably‐expressing A549 cells (Cas9‐A549) |
This paper |
N/A |
| Human: MICU1 KO #1 A549 cells |
This paper |
N/A |
| Human: MICU1 KO #2 A549 cells |
This paper |
N/A |
| Human: MCU KO #1 A549 cells |
This paper |
N/A |
| Human: MCU KO #2 A549 cells |
This paper |
N/A |
| Human: HepG2 cells |
ATCC |
N/A |
| Human: HEK293A cells |
ATCC |
N/A |
| Human: HEK293T cells |
ATCC |
N/A |
| Human: Cas9‐stably‐expressing HT‐1080 cells (Cas9‐HT‐1080) |
This paper |
N/A |
|
Recombinant DNA
|
|
|
| pLenti CMV/TO Puro DEST (670‐1) |
Addgene |
Cat#17293 |
| pLenti CMV/TO Neo DEST |
This paper |
N/A |
| pLenti CMV T/O MICU1‐WT‐HA Neo DEST (CDS of NM_001195518.2) |
This paper |
N/A |
| pLenti CMV T/O MICU1‐∆EF‐HA Neo DEST |
This paper |
N/A |
| pLenti CMV T/O MICU1‐∆DID‐HA Neo DEST |
This paper |
N/A |
| pLenti CMV T/O MICU1‐∆DIMER‐HA Neo DEST |
This paper |
N/A |
| pLenti CMV T/O MICU1‐∆EMRE‐HA Neo DEST |
This paper |
N/A |
| GeCKOv2 human library (A/B) |
Addgene |
Cat#1000000048 |
| lentiCas9‐Blast |
Addgene |
Cat#52962 |
| pCMV‐VSV‐G |
Addgene |
Cat#8454 |
| psPAX2 |
Addgene |
Cat#12260 |
| lentiCRISPRv2 |
Addgene |
Cat#52961 |
| lentiGuide‐Puro |
Addgene |
Cat#52963 |
|
Antibodies
|
|
|
| Mouse monoclonal anti‐Actin (Actin; AC‐40) |
Sigma‐Aldrich |
Cat#A3853 |
| Mouse monoclonal anti‐CCDC109A (MCU; E‐9) |
Santa Cruz |
Cat#sc‐515930 |
| Rabbit monoclonal anti‐ASK1 (ASK1; EP553Y) |
Abcam |
Cat#ab45178 |
| Rabbit polyclonal anti‐MICU1 |
Sigma‐Aldrich |
Cat#HPA037480 |
| Rabbit polyclonal anti‐phospho‐ASK (p‐ASK; Thr838 in human ASK1) |
Tobiume et al, 2002 |
N/A |
| Rat monoclonal anti‐α Tubulin (α Tubulin; YL1/2) |
Santa Cruz Biotechnology |
Cat#sc‐53029 |
|
Oligonucleotides and sequence‐based reagents
|
|
|
| Primers for sgRNAs |
This paper |
Table EV1
|
| Primers for cloning and subcloning |
This paper |
Table EV1
|
| Primers for qRT‐PCR |
Bidaux et al,
2015
|
Table EV1
|
| Control siRNA (ON‐TARGET plus Non‐targeting siRNA #4, target sequence: 5’‐UGGUUUACAGUUUUCCUA‐3’) |
Dharmacon |
Cat#D‐001810‐04‐05 |
| MICU1 siRNA #1 (ON‐TARGET plus MICU1 siRNA, target sequence: 5’‐GCAGUUUGGUGGCAUGCUA‐3’) |
Dharmacon |
Cat#J‐012720‐18 |
| MICU1 siRNA #2 (ON‐TARGET plus MICU1 siRNA, target sequence: 5’‐UCCUCGAAUUUCAGCGUAA‐3’) |
Dharmacon |
Cat#J‐012720‐19 |
| MCU siRNA #1 (ON‐TARGET plus MCU siRNA, target sequence: 5’‐GUUUUGACCUAGAGAAAUA −3’) |
Dharmacon |
Cat#J‐015519‐18 |
| MCU siRNA #2 (ON‐TARGET plus MCU siRNA, target sequence: 5’‐GUAAUGACACGCCAGGAAU‐3’) |
Dharmacon |
Cat#J‐015519‐20 |
| MICU2 siRNA#1 (ON‐TARGET plus MICU2 siRNA, target sequence: 5’‐GCAUCGAGGUUUAUGGGUA‐3’) |
Dharmacon |
Cat#J‐015468‐17 |
| MICU2 siRNA#2 (ON‐TARGET plus MICU2 siRNA, target sequence: 5’‐UGAGCAAAUGGAACGUAAA‐3’) |
Dharmacon |
Cat#J‐015468‐18 |
| Control siRNA (Stealth RNAi Negative Control Medium GC Duplex #2) |
Invitrogen |
Cat#12935‐112 |
| TRPM8 siRNA #1 (Stealth RNAi siRNA, target sequence: 5’‐AGGAGUACUGCAGCCGCCUCAAUAU‐3’) |
Invitrogen |
Cat#HSS128188 |
|
Chemicals, enzymes and other reagents
|
|
|
| Antimycin A |
Sigma‐Ardrich |
Cat#A8674 |
| BAPTA‐AM |
Dojindo |
Cat#B035 |
| Blastcidin S HCl |
Invitrogen |
Cat#A1113903 |
| C11‐BODIPY 581/591 |
Invitrogen |
Cat#D3861 |
| Cal‐520 AM |
Abcam |
Cat#ab171868 |
| Cell Counting Kit‐8 |
Dojindo |
Cat#CK04 |
| Carbonyl cyanide 4‐(trifluoromethoxy) phenylhydrazone (FCCP) |
Cayman |
Cat#15218 |
| Deferoxiamine |
Cayman |
Cat#14595 |
| Decylubiquinone (decylQ) |
Cayman |
Cat#21027 |
| Erastin |
Sigma‐Ardrich |
Cat#E7781 |
| Ferrostain‐1 |
Sigma‐Ardrich |
Cat#SML0583 |
| FerroFarRed |
Gryoukayaku |
Cat#GC903‐01 |
| G418 |
Invitrogen |
Cat#10131‐035 |
| Gateway LR Clonase ll Enzyme Mix |
Invitrogen |
Cat#11791‐100 |
| Hexadimethrine Bromide (Polybrene) |
Nakarai tesque |
Cat#17736‐44 |
| JC‐1 |
Cayman |
Cat#10009172 or Cat#15003 |
| Lipofectamine 3000 reagent |
Invitrogen |
Cat#130469 |
| Lipofectamine RNAiMAX |
Invitrogen |
Cat#13778‐150 |
| Mitoquinone mesylate (mitoQ) |
MCH |
Cat#HY‐100116A |
| Puromycin |
Gibco |
Cat#A11138‐03 |
| Rhod‐2 AM |
Abcam |
Cat#ab142780 |
| Tetramethyl rhodamine, Ethyl Ester, Perchlorate (TMRE) |
Invitrogen |
Cat#T669 |
| Pluronic F127 |
Invitrogen |
Cat#31382W |
| LDH‐Cytotoxic Test |
Wako |
Cat#299‐50601 |
|
Software
|
|
|
| MAGeCK (ver. 0.5.9) |
Li et al,
2014
|
https://sourceforge.net/projects/mageck/
|
| FlowCal (ver. 1.2.1) |
Castillo‐Hair et al,
2016
|
https://pypi.org/project/FlowCal/
|
| MAGeCKFlute |
Wang et al,
2019
|
https://bioconductor.org/packages/release/bioc/html/MAGeCKFlute.html
|
| clusterProfiler |
Yu et al,
2012
|
https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
|
|
Other
|
|
|
| 96‐well imaging microplate with lid |
Falcon |
Cat# 353219 |
| Varioskan Flash |
Thermo Fisher Scientifc |
|
| FACSCalibur |
BD Biosciences |
|
| QuantStadio1 Real‐Time PCR System |
ABI |
|