Experimental Models
|
|
|
Human: A549 cells |
ATCC |
N/A |
Human: Cas9‐stably‐expressing A549 cells (Cas9‐A549) |
This paper |
N/A |
Human: MICU1 KO #1 A549 cells |
This paper |
N/A |
Human: MICU1 KO #2 A549 cells |
This paper |
N/A |
Human: MCU KO #1 A549 cells |
This paper |
N/A |
Human: MCU KO #2 A549 cells |
This paper |
N/A |
Human: HepG2 cells |
ATCC |
N/A |
Human: HEK293A cells |
ATCC |
N/A |
Human: HEK293T cells |
ATCC |
N/A |
Human: Cas9‐stably‐expressing HT‐1080 cells (Cas9‐HT‐1080) |
This paper |
N/A |
Recombinant DNA
|
|
|
pLenti CMV/TO Puro DEST (670‐1) |
Addgene |
Cat#17293 |
pLenti CMV/TO Neo DEST |
This paper |
N/A |
pLenti CMV T/O MICU1‐WT‐HA Neo DEST (CDS of NM_001195518.2) |
This paper |
N/A |
pLenti CMV T/O MICU1‐∆EF‐HA Neo DEST |
This paper |
N/A |
pLenti CMV T/O MICU1‐∆DID‐HA Neo DEST |
This paper |
N/A |
pLenti CMV T/O MICU1‐∆DIMER‐HA Neo DEST |
This paper |
N/A |
pLenti CMV T/O MICU1‐∆EMRE‐HA Neo DEST |
This paper |
N/A |
GeCKOv2 human library (A/B) |
Addgene |
Cat#1000000048 |
lentiCas9‐Blast |
Addgene |
Cat#52962 |
pCMV‐VSV‐G |
Addgene |
Cat#8454 |
psPAX2 |
Addgene |
Cat#12260 |
lentiCRISPRv2 |
Addgene |
Cat#52961 |
lentiGuide‐Puro |
Addgene |
Cat#52963 |
Antibodies
|
|
|
Mouse monoclonal anti‐Actin (Actin; AC‐40) |
Sigma‐Aldrich |
Cat#A3853 |
Mouse monoclonal anti‐CCDC109A (MCU; E‐9) |
Santa Cruz |
Cat#sc‐515930 |
Rabbit monoclonal anti‐ASK1 (ASK1; EP553Y) |
Abcam |
Cat#ab45178 |
Rabbit polyclonal anti‐MICU1 |
Sigma‐Aldrich |
Cat#HPA037480 |
Rabbit polyclonal anti‐phospho‐ASK (p‐ASK; Thr838 in human ASK1) |
Tobiume et al, 2002 |
N/A |
Rat monoclonal anti‐α Tubulin (α Tubulin; YL1/2) |
Santa Cruz Biotechnology |
Cat#sc‐53029 |
Oligonucleotides and sequence‐based reagents
|
|
|
Primers for sgRNAs |
This paper |
Table EV1
|
Primers for cloning and subcloning |
This paper |
Table EV1
|
Primers for qRT‐PCR |
Bidaux et al,
2015
|
Table EV1
|
Control siRNA (ON‐TARGET plus Non‐targeting siRNA #4, target sequence: 5’‐UGGUUUACAGUUUUCCUA‐3’) |
Dharmacon |
Cat#D‐001810‐04‐05 |
MICU1 siRNA #1 (ON‐TARGET plus MICU1 siRNA, target sequence: 5’‐GCAGUUUGGUGGCAUGCUA‐3’) |
Dharmacon |
Cat#J‐012720‐18 |
MICU1 siRNA #2 (ON‐TARGET plus MICU1 siRNA, target sequence: 5’‐UCCUCGAAUUUCAGCGUAA‐3’) |
Dharmacon |
Cat#J‐012720‐19 |
MCU siRNA #1 (ON‐TARGET plus MCU siRNA, target sequence: 5’‐GUUUUGACCUAGAGAAAUA −3’) |
Dharmacon |
Cat#J‐015519‐18 |
MCU siRNA #2 (ON‐TARGET plus MCU siRNA, target sequence: 5’‐GUAAUGACACGCCAGGAAU‐3’) |
Dharmacon |
Cat#J‐015519‐20 |
MICU2 siRNA#1 (ON‐TARGET plus MICU2 siRNA, target sequence: 5’‐GCAUCGAGGUUUAUGGGUA‐3’) |
Dharmacon |
Cat#J‐015468‐17 |
MICU2 siRNA#2 (ON‐TARGET plus MICU2 siRNA, target sequence: 5’‐UGAGCAAAUGGAACGUAAA‐3’) |
Dharmacon |
Cat#J‐015468‐18 |
Control siRNA (Stealth RNAi Negative Control Medium GC Duplex #2) |
Invitrogen |
Cat#12935‐112 |
TRPM8 siRNA #1 (Stealth RNAi siRNA, target sequence: 5’‐AGGAGUACUGCAGCCGCCUCAAUAU‐3’) |
Invitrogen |
Cat#HSS128188 |
Chemicals, enzymes and other reagents
|
|
|
Antimycin A |
Sigma‐Ardrich |
Cat#A8674 |
BAPTA‐AM |
Dojindo |
Cat#B035 |
Blastcidin S HCl |
Invitrogen |
Cat#A1113903 |
C11‐BODIPY 581/591 |
Invitrogen |
Cat#D3861 |
Cal‐520 AM |
Abcam |
Cat#ab171868 |
Cell Counting Kit‐8 |
Dojindo |
Cat#CK04 |
Carbonyl cyanide 4‐(trifluoromethoxy) phenylhydrazone (FCCP) |
Cayman |
Cat#15218 |
Deferoxiamine |
Cayman |
Cat#14595 |
Decylubiquinone (decylQ) |
Cayman |
Cat#21027 |
Erastin |
Sigma‐Ardrich |
Cat#E7781 |
Ferrostain‐1 |
Sigma‐Ardrich |
Cat#SML0583 |
FerroFarRed |
Gryoukayaku |
Cat#GC903‐01 |
G418 |
Invitrogen |
Cat#10131‐035 |
Gateway LR Clonase ll Enzyme Mix |
Invitrogen |
Cat#11791‐100 |
Hexadimethrine Bromide (Polybrene) |
Nakarai tesque |
Cat#17736‐44 |
JC‐1 |
Cayman |
Cat#10009172 or Cat#15003 |
Lipofectamine 3000 reagent |
Invitrogen |
Cat#130469 |
Lipofectamine RNAiMAX |
Invitrogen |
Cat#13778‐150 |
Mitoquinone mesylate (mitoQ) |
MCH |
Cat#HY‐100116A |
Puromycin |
Gibco |
Cat#A11138‐03 |
Rhod‐2 AM |
Abcam |
Cat#ab142780 |
Tetramethyl rhodamine, Ethyl Ester, Perchlorate (TMRE) |
Invitrogen |
Cat#T669 |
Pluronic F127 |
Invitrogen |
Cat#31382W |
LDH‐Cytotoxic Test |
Wako |
Cat#299‐50601 |
Software
|
|
|
MAGeCK (ver. 0.5.9) |
Li et al,
2014
|
https://sourceforge.net/projects/mageck/
|
FlowCal (ver. 1.2.1) |
Castillo‐Hair et al,
2016
|
https://pypi.org/project/FlowCal/
|
MAGeCKFlute |
Wang et al,
2019
|
https://bioconductor.org/packages/release/bioc/html/MAGeCKFlute.html
|
clusterProfiler |
Yu et al,
2012
|
https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
|
Other
|
|
|
96‐well imaging microplate with lid |
Falcon |
Cat# 353219 |
Varioskan Flash |
Thermo Fisher Scientifc |
|
FACSCalibur |
BD Biosciences |
|
QuantStadio1 Real‐Time PCR System |
ABI |
|