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. 2021 Apr 6;22(5):e51532. doi: 10.15252/embr.202051532
Reagent/Resource Reference or Source Identifier or Catalog Number
Experimental Models
Human: A549 cells ATCC N/A
Human: Cas9‐stably‐expressing A549 cells (Cas9‐A549) This paper N/A
Human: MICU1 KO #1 A549 cells This paper N/A
Human: MICU1 KO #2 A549 cells This paper N/A
Human: MCU KO #1 A549 cells This paper N/A
Human: MCU KO #2 A549 cells This paper N/A
Human: HepG2 cells ATCC N/A
Human: HEK293A cells ATCC N/A
Human: HEK293T cells ATCC N/A
Human: Cas9‐stably‐expressing HT‐1080 cells (Cas9‐HT‐1080) This paper N/A
Recombinant DNA
pLenti CMV/TO Puro DEST (670‐1) Addgene Cat#17293
pLenti CMV/TO Neo DEST This paper N/A
pLenti CMV T/O MICU1‐WT‐HA Neo DEST (CDS of NM_001195518.2) This paper N/A
pLenti CMV T/O MICU1‐∆EF‐HA Neo DEST This paper N/A
pLenti CMV T/O MICU1‐∆DID‐HA Neo DEST This paper N/A
pLenti CMV T/O MICU1‐∆DIMER‐HA Neo DEST This paper N/A
pLenti CMV T/O MICU1‐∆EMRE‐HA Neo DEST This paper N/A
GeCKOv2 human library (A/B) Addgene Cat#1000000048
lentiCas9‐Blast Addgene Cat#52962
pCMV‐VSV‐G Addgene Cat#8454
psPAX2 Addgene Cat#12260
lentiCRISPRv2 Addgene Cat#52961
lentiGuide‐Puro Addgene Cat#52963
Antibodies
Mouse monoclonal anti‐Actin (Actin; AC‐40) Sigma‐Aldrich Cat#A3853
Mouse monoclonal anti‐CCDC109A (MCU; E‐9) Santa Cruz Cat#sc‐515930
Rabbit monoclonal anti‐ASK1 (ASK1; EP553Y) Abcam Cat#ab45178
Rabbit polyclonal anti‐MICU1 Sigma‐Aldrich Cat#HPA037480
Rabbit polyclonal anti‐phospho‐ASK (p‐ASK; Thr838 in human ASK1) Tobiume et al, 2002 N/A
Rat monoclonal anti‐α Tubulin (α Tubulin; YL1/2) Santa Cruz Biotechnology Cat#sc‐53029
Oligonucleotides and sequence‐based reagents
Primers for sgRNAs This paper Table EV1
Primers for cloning and subcloning This paper Table EV1
Primers for qRT‐PCR Bidaux et al, 2015 Table EV1
Control siRNA (ON‐TARGET plus Non‐targeting siRNA #4, target sequence: 5’‐UGGUUUACAGUUUUCCUA‐3’) Dharmacon Cat#D‐001810‐04‐05
MICU1 siRNA #1 (ON‐TARGET plus MICU1 siRNA, target sequence: 5’‐GCAGUUUGGUGGCAUGCUA‐3’) Dharmacon Cat#J‐012720‐18
MICU1 siRNA #2 (ON‐TARGET plus MICU1 siRNA, target sequence: 5’‐UCCUCGAAUUUCAGCGUAA‐3’) Dharmacon Cat#J‐012720‐19
MCU siRNA #1 (ON‐TARGET plus MCU siRNA, target sequence: 5’‐GUUUUGACCUAGAGAAAUA −3’) Dharmacon Cat#J‐015519‐18
MCU siRNA #2 (ON‐TARGET plus MCU siRNA, target sequence: 5’‐GUAAUGACACGCCAGGAAU‐3’) Dharmacon Cat#J‐015519‐20
MICU2 siRNA#1 (ON‐TARGET plus MICU2 siRNA, target sequence: 5’‐GCAUCGAGGUUUAUGGGUA‐3’) Dharmacon Cat#J‐015468‐17
MICU2 siRNA#2 (ON‐TARGET plus MICU2 siRNA, target sequence: 5’‐UGAGCAAAUGGAACGUAAA‐3’) Dharmacon Cat#J‐015468‐18
Control siRNA (Stealth RNAi Negative Control Medium GC Duplex #2) Invitrogen Cat#12935‐112
TRPM8 siRNA #1 (Stealth RNAi siRNA, target sequence: 5’‐AGGAGUACUGCAGCCGCCUCAAUAU‐3’) Invitrogen Cat#HSS128188
Chemicals, enzymes and other reagents
Antimycin A Sigma‐Ardrich Cat#A8674
BAPTA‐AM Dojindo Cat#B035
Blastcidin S HCl Invitrogen Cat#A1113903
C11‐BODIPY 581/591 Invitrogen Cat#D3861
Cal‐520 AM Abcam Cat#ab171868
Cell Counting Kit‐8 Dojindo Cat#CK04
Carbonyl cyanide 4‐(trifluoromethoxy) phenylhydrazone (FCCP) Cayman Cat#15218
Deferoxiamine Cayman Cat#14595
Decylubiquinone (decylQ) Cayman Cat#21027
Erastin Sigma‐Ardrich Cat#E7781
Ferrostain‐1 Sigma‐Ardrich Cat#SML0583
FerroFarRed Gryoukayaku Cat#GC903‐01
G418 Invitrogen Cat#10131‐035
Gateway LR Clonase ll Enzyme Mix Invitrogen Cat#11791‐100
Hexadimethrine Bromide (Polybrene) Nakarai tesque Cat#17736‐44
JC‐1 Cayman Cat#10009172 or Cat#15003
Lipofectamine 3000 reagent Invitrogen Cat#130469
Lipofectamine RNAiMAX Invitrogen Cat#13778‐150
Mitoquinone mesylate (mitoQ) MCH Cat#HY‐100116A
Puromycin Gibco Cat#A11138‐03
Rhod‐2 AM Abcam Cat#ab142780
Tetramethyl rhodamine, Ethyl Ester, Perchlorate (TMRE) Invitrogen Cat#T669
Pluronic F127 Invitrogen Cat#31382W
LDH‐Cytotoxic Test Wako Cat#299‐50601
Software
MAGeCK (ver. 0.5.9) Li et al, 2014 https://sourceforge.net/projects/mageck/
FlowCal (ver. 1.2.1) Castillo‐Hair et al, 2016 https://pypi.org/project/FlowCal/
MAGeCKFlute Wang et al, 2019 https://bioconductor.org/packages/release/bioc/html/MAGeCKFlute.html
clusterProfiler Yu et al, 2012 https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
Other
96‐well imaging microplate with lid Falcon Cat# 353219
Varioskan Flash Thermo Fisher Scientifc
FACSCalibur BD Biosciences
QuantStadio1 Real‐Time PCR System ABI