Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Software, algorithm | IMP (Integrative Modeling Platform) | https://integrativemodeling.org;https://doi.org/10.1371/journal.pbio.1001244 | RRID:SCR_002982 | Version 2.8 |
| Software, algorithm | UCSF Chimera | https://www.cgl.ucsf.edu/chimera/ https://doi.org/10.1002/jcc.20084 | RRID:SCR_004097 | |
| Strain, strain background (Escherichia coli) | BL21(DE3) CodonPlus-RIL | Agilent | Part No.:230245 | |
| Genetic reagent (Homo sapiens, Saccharomyces cerevisiae) | pET28a-3C-Xrcc4-Spc110(164-207) | This paper | Uniprot:Q13426 (Xrcc4); Uniprot:32380 (Spc110) | Construct contains residues 2–132 of H. sapiens Xrcc4 fused with residues 164–207 of S. cerevisiae Spc110 |
| Software, algorithm | XDS | Kabsch, 2010; DOI: https://doi.org/10.1107/S0907444909047337 | RRID:SCR_015652 | Version: October 15, 2015 |
| Software, algorithm | Phenix | Adams et al., 2010; DOI: https://doi.org/10.1107/S0907444909052925; McCoy et al., 2007; DOI: https://doi.org/10.1107/S0021889807021206; Terwilliger et al., 2008; DOI: https://doi.org/10.1107/S090744490705024X Afonine et al., 2012; DOI:https://doi.org/10.1107/S0907444912001308 | RRID:SCR_014224 | Version 1.10.1_2155 |
| Software, algorithm | Coot | Emsley et al., 2010; DOI: https://doi.org/10.1107/S0907444910007493 | RRID:SCR_014222 | Version 0.8.3 |
| Software, algorithm | Kojak, XL identification algorithm | http://www.kojak-ms.org/ | RRID:SCR_021028 | Versions 1.4.1 and 1.4.3 |
| Software, algorithm | ProXL, protein XL data visualization | https://proxl-ms.org/ | RRID:SCR_021027 | |
| Chemical compound, drug | DSS | Thermo Fisher Scientific | 21655 | |
| Chemical compound, drug | EDC | Thermo Fisher Scientific | A35391 | |
| Chemical compound, drug | Sulfo-NHS | Thermo Fisher Scientific | A39269 | |
| Software, algorithm | cisTEM | Grant et al., 2018.DOI:10.7554/eLife.35383 | RRID:SCR_016502 | Version 1.0 beta |
| Software, algorithm | Relion | Scheres, 2012. PMID:23000701; DOI: 10.1016/j.jsb.2012.09.006 | RRID:SCR_016274 | |
| Genetic reagent (S. cerevisiae) | pFastBac-Tub4p | Vinh et al., 2002. doi: 10.1091/mbc.02-01-0607 | ||
| Genetic reagent (S. cerevisiae) | pFastBac-Spc97p | Vinh et al., 2002. doi: 10.1091/mbc.02-01-0607 | ||
| Genetic reagent (S. cerevisiae) | pFastBac-Spc98p | Vinh et al., 2002. doi: 10.1091/mbc.02-01-0607 | ||
| Genetic reagent (S. cerevisiae) | pFastBac-GST-Spc110p1-220 | Vinh et al., 2002. doi: 10.1091/mbc.02-01-0607 | ||
| Genetic reagent (S. cerevisiae) | pFastBac-Tub4pS58C/G288C | Kollman et al., 2015. DOI: 10.1038/nsmb.2953 |