Table 3.
Sample ID | Cells or nuclei loaded (predicted from FACS) | Cells with RNA-Seq data | Ratio of sequenced cells to loaded cells | Average UMI count with intronic reads mapped | Average gene count with intronic reads mapped |
---|---|---|---|---|---|
4579 | 4000 | 680 | 0.17 | 2474 | 1559 |
4602 | 6900 | 2316 | 0.3356522 | 2004 | 1268 |
4683 | 6300 | 2081 | 0.3303175 | 1397 | 876 |
4695 | 4000 | 833 | 0.20825 | 1487 | 974 |
4701 | 12300 | 4414 | 0.3588618 | 1296 | 780 |
4950 | 5200 | 1237 | 0.2378846 | 1415 | 910 |
4969 | 5300 | 653 | 0.1232075 | 1262 | 1262 |
4966 | 2100 | 432 | 0.2057143 | 1856 | 1193 |
4988 | 1200 | 237 | 0.1975 | 2354 | 1554 |
4992 | 673 | 60 | 0.089153 | 3939 | 2336 |
5031 | 5200 | 1728 | 0.3323077 | 1538 | 967 |
5035 | 7100 | 2524 | 0.355493 | 1886 | 1119 |
5040 | 2300 | 755 | 0.3282609 | 1941 | 1212 |
5047 | 5000 | 957 | 0.1914 | 1701 | 1013 |
5054 | 3100 | 1219 | 0.3932258 | 2071 | 1216 |
5059 | 1200 | 338 | 0.2816667 | 2470 | 1474 |
FACS, fluorescence-activated cell sorter; RNA-seq, RNA sequencing; UMI, unique molecular identifier.