Table 1.
Online services of circRNA
| Name | Website | Description |
|---|---|---|
| StarBase v2.0 | http://starbase.sysu.edu.cn/ | To predict miRNA-circRNA interactions |
| CircBase | http://www.circbase.org | To explore public circRNA datasets |
| Tissue-Specific CircRNA Database | http://gb.whu.edu.cn/TSCD/ | To provide a global view for tissue-specific circRNA in main tissues of human and mouse |
| MiOncoCirc | https://mioncocirc.github.io/ | Query the expression of a certain circRNA in different cancer clinical samples |
| ExoRBase | http://www.exoRBase.org | To trigger new circulating biomarker discovery and functional implication for human diseases. |
| CirclncRNAnet | http://app.cgu.edu.tw/circlnc/ | To view the expression information of database samples according to gene names. |
| TRCirc | http://www.licpathway.net/TRCirc/view/index | To search and browse TFBSs of circRNAs, and other related information, for specific TFs, cell lines or circRNAs of interest |
| Circ2Traits | http://gyanxet-beta.com/circdb/ | To collect circRNA databases that are potentially associated with human diseases or traits |
| CircRNADisease | http://cgga.org.cn:9091/circRNADisease/ | To explore circRNA and disease associations |
| DeepBase v2.0 | http://rna.sysu.edu.cn/deepBase/ | To annotate and discover small (microRNAs), lncRNAs and circRNAs from next generation sequencing data |
| CircRNADb | http://reprod.njmu.edu.cn/circrnadb | A database for annotating exonic circRNAs, and can be a valuable resource for large-scale studies of circRNA |
| RegRNA 2.0 | http://regrna2.mbc.nctu.edu.tw/index.html | To identify functional RNA motifs in an input RNA sequence |
| MiRWalk 3.0 | http://mirwalk.umm.uni-heidelberg.de/ | To predict and experimentally verify miRNA-target interactions with various novel and unique features |
| CircNet | http://circnet.mbc.nctu.edu.tw/ | Identification of new circRNAs and integration of circRNA-miRNA-mRNA interaction network. |
| Cirbank | http://www.circbank.cn/help.html | To analyze the coding potential of circular RNA proteins |
| CircFunBase | http://bis.zju.edu.cn/CircFunBaseBlast/ | To quickly query the name and function introduction of circleRNA |
| CircAtlas | http://circatlas.biols.ac.cn/ | To use GO and KEGG databases to predict the potential functions of these circRNAs |
| BIOINF | http://www.bioinf.com.cn/ | CircRNA primer design |
| Cancer-specific circRNA database | http://gb.whu.edu.cn/CSCD/ | To find circRNA based on tumor cells |
| CIRCpedia | http://www.picb.ac.cn/rnomics/circpedia | To annotate alternative back-splicing and alternative splicing in circRNAs across different cell lines |
| Circular RNA Interactome | https://circinteractome.nia.nih.gov/ | To predict and map the binding sites for RBPs and miRNAs on reported circRNAs |