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A hierarchical strategy for determining whole-chromosome haplotypes. The haplotype phase of parental chromosomes (open and filled rectangles) are represented by the positions of alternate genotypes at heterozygous sites. Megabase-scale haplotype blocks are determined using linkage information (∼10kb range) from linked-reads or long-read sequencing and then concatenated using Hi-C contacts, first within each chromosome arm and then between the p- and q-arms
