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. 2021 May 6;7:19. doi: 10.1038/s41540-021-00178-6

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — Shown are the contributions (mmol/person/day, Supplementary Table 6) summarised separately for the 25 healthy, 63 non-dysbiotic IBD, and 20 dysbiotic IBD microbiomes. a Phylum-level contributions to all metabolites summarised by metabolite subsystem. b Phylum-level contributions to 22 amino acid metabolites. Ac = Actinobacteria, Ba = Bacteroidetes, Eu = Eurarchaeota, Fi = Firmicutes, Fu = Fusobacteria, Pr = Proteobacteria, Ve = Verrucomicrobia. Phyla that did not contribute in a given cluster are omitted for that cluster.