TABLE 1.
Primer | Nucleotide sequence (5′–3′) | Position on the sequence | In combination with | Expected amplicon length | Ta°C | t elong. |
RPB1-3F | GTC TTC GTG CAG TTT GGG A | 727–745 | RPB1-5R [1 μM] | ≈1,410 bp | 55 | 1 min 30 s |
RPB1-4F | CTA GGC CTG ATT GGA TGA T | 1,204–1,222 | RPB1-5RN [500 nM] | ≈870 bp | 54 | 1 min |
RPB1-4F1 | GCT CGT CCT GAT TGG ATG A | 1,203–1,221 | RPB1-5R [1 μM] | ≈935 bp | 55 | 1 min |
RPB1-5R | ACG ATT TGT TTT GGT ACC AT | 2,119–2,138 | ||||
RPB1-5RN | TTC ATC TCA TCA CCA TCA A | 2,048–2,066 |
The position of primers is given based on sequence of Rhizoglomus intraradices HG316020.1. The final concentration of the reverse primers is provided for each combination, as well as the expected product size, the temperature of annealing (Ta), and the time of elongation (t elong).