Table 1.
The statistics of the M. ruthenica genome
| Genome assembly | N50 | N90 | Total length | |
|---|---|---|---|---|
| Contigs | 612.99 Kb | 247.80 Kb | 902.93 Mb | |
| Scaffolds | 99.39 Mb | 90.05 Mb | 904.13 Mb | |
| Genome annotation | Repetitive sequences | Categories | Length (bp) | Percentage (%) |
| DNA transposon | 24,361,896 | 2.6841 | ||
| LTR | 470,694,297 | 51.859 | ||
| LINE | 15,815,260 | 1.7425 | ||
| SINE | 81,673 | 0.0090 | ||
| Other | 6,173,813 | 0.6753 | ||
| Protein-coding genes | Number | Annotated number | Average CDS length | |
| 50,162 | 49,176 | 1050 bp | ||
| Non-coding RNAs | Categories | Number | Percentage (%) | |
| miRNA | 3820 | 0.0538 | ||
| tRNA | 788 | 0.0065 | ||
| rRNA | 364 | 0.0050 | ||
| snRNA | 2892 | 0.0355 |
LTR long terminal repeat, LINE long interspersed nuclear elements, SINE short interspersed nuclear elements, CDS coding sequence