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Overview of multiPhATE2 system and workflow. User-specified configurations (configuration file) are input to the multiPhATE2 system, which invokes four subsystems: Gene Calling, the PhATE annotation pipeline, Compare Gene Profiles, which performs binary genome-to-genome comparisons of genes and proteins, and Genomics, which consolidates binary comparisons into gene–gene and protein–protein correspondences among all input genomes.
