TABLE 3.
Fractions of isolate variable and isolate-specific genes and of variable and strain-specific genes not recovered by MAGsa
| MAG/isol | ANI (isolate vs MAG) (%) | % of the following isolate genes/total isolate genes: |
% of isolate genes shared with MAGs | % of isolate core genes missed by MAGs/core genes | % of isolate variable genes missed by MAGs/variable genes | ||
|---|---|---|---|---|---|---|---|
| Core | Variable | Isolate specific | |||||
| MG24-MAG/E158 | 99.990 | 98.925 (4,878) | 0.932 (46) | 0.142 (7) | 64.875 (3,199) | 34.706 (1,693) | 69.56 (32) |
| MG23-MAG/E124 | 99.990 | 97.532 (4,902) | 2.009 (101) | 0.457 (23) | 84.779 (4,261) | 13.851 (679) | 62.37 (63) |
| MG31-MAG/Q51 | 96.990 | 97.421 (4,910) | 2.24 (113) | 0.337 (17) | 42.023 (2,118) | 57.617 (2,829) | 67.25 (76) |
| MG6-MAG/B45 | 99.990 | 98.504 (4,676) | 1.390 (66) | 0.105 (5) | 88.561 (4,204) | 11.313 (529) | 13.63 (9) |
| MG19-MAG/E184 | 99.970 | 98.540 (4,793) | 1.398 (68) | 0.062 (3) | 76.356 (3,714) | 23.158 (1,110) | 54.41 (37) |
| MG25-MAG/E230 | 99.840 | 86.680 (6,059) | 0.000 | 13.319 (931) | 62.532 (4,371) | 27.859 (1,688) | 0.000 |
| MG15-MAG/B200 | 98.890 | 92.187 (4,295) | 0.000 | 7.812 (364) | 69.027 (3,216) | 25.122 (1,079) | 0.000 |
| MG32-MAG/Q196 | 97.630 | 97.18 (4,910) | 0.000 | 2.810 (142) | 70.269 (3,550) | 27.698 (1,360) | 0.000 |
aAbsolute numbers of genes are given in parentheses.