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. 2021 May 5;9:e11348. doi: 10.7717/peerj.11348

Table 7. Performance comparison between TQMD and dRep on two smaller datasets.

# gen, starting number of genomes; # repr, final/common number of representative genomes; # spec, starting/final/common number of species; h.CPU, upper bound on CPU use (i.e., product of wall-clock time and number of CPUs). With TQMD, a distance threshold of 0.6 was used for Bacteroidetes and a threshold of 0.4 for Streptomycetales. In both cases, the pack size was 200, the clustering mode was set to “loose” and the taxonomic sort was selected.

Dataset Starting TQMD - JELLYFISH k12 dRep Intersection
# gen. # spec. # repr. # spec. h.CPU # repr. # spec. h.CPU # repr. # spec.
Bacteroidetes 1,127 528 789 517 60 835 516 50 707 511
Streptomycetales 648 220 486 207 40 430 189 250 392 175