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clustering of sequences from Illumina (denoted int) and fast base-called Q8 ONT sequences (denoted Q8) of 12 E. coli, based on core genome SNPs. SNPs were trimmed away if they were within a proximity of 10, together with masking of DCM methylation-sites. Isolates Ec01–Ec06 are from an outbreak in Denmark and Ec07–Ec12 originate from different foreign countries.
