Table 1. The HSF genes identifed from the H. perforatum.
| Gene name | Transcript ID | Length | MW (kDa) | pI | n.c.r. (%) | p.c.r. (%) | I.I. | Stability | A.I. | GRAVY | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protein | CDS | Gene | ||||||||||
| HpHSF01 | HperS113g0097 | 293 | 882 | 1058 | 32.23 | 5.05 | 43 (14.7%) | 35 (11.9%) | 57.40 | unstable | 75.26 | −0.523 |
| HpHSF02 | HperS020g0043 | 381 | 1146 | 1687 | 43.75 | 5.51 | 59 (15.5%) | 48 (12.6%) | 59.80 | unstable | 71.55 | −0.752 |
| HpHSF03 | HperS219g0006 | 327 | 984 | 1842 | 37.9 | 7.29 | 36 (11.0%) | 36 (11.0%) | 47.69 | unstable | 72.14 | −0.660 |
| HpHSF04 | HperS024g0021 | 222 | 669 | 1798 | 25.95 | 7.72 | 34 (15.3%) | 35 (15.8%) | 52.96 | unstable | 73.24 | −0.796 |
| HpHSF05 | HperS024g0048 | 196 | 591 | 2959 | 22.47 | 6.85 | 31 (15.8%) | 31 (15.8%) | 46.57 | unstable | 69.08 | −0.747 |
| HpHSF06 | HperS245g0169 | 226 | 681 | 3135 | 25.88 | 6.86 | 34 (15.0%) | 34 (15.0%) | 48.26 | unstable | 69.38 | −0.737 |
| HpHSF07 | HperS025g0041 | 434 | 1305 | 1764 | 48.47 | 5.22 | 64 (14.7%) | 47 (10.8%) | 58.65 | unstable | 76.18 | −0.577 |
| HpHSF08 | HperS254g0338 | 376 | 1131 | 1300 | 42.04 | 5.67 | 45 (12.0%) | 39 (10.4%) | 66.18 | unstable | 64.84 | −0.655 |
| HpHSF09 | HperS338g0001 | 330 | 993 | 1169 | 36.57 | 5.67 | 43 (13.0%) | 38 (11.5%) | 50.96 | unstable | 60.24 | −0.600 |
| HpHSF10 | HperS346g0011 | 428 | 1287 | 1897 | 48.01 | 4.91 | 66 (15.4%) | 44 (10.3%) | 56.52 | unstable | 67.64 | −0.642 |
| HpHSF11 | HperS346g0247 | 324 | 975 | 1054 | 37.51 | 5.91 | 45 (13.9%) | 38 (11.7%) | 57.46 | unstable | 59.85 | −0.813 |
| HpHSF12 | HperS362g0014 | 409 | 1230 | 1464 | 46.16 | 5.02 | 65 (15.9%) | 43 (10.5%) | 57.83 | unstable | 65.99 | −0.745 |
| HpHSF13 | HperS388g0082 | 403 | 1212 | 2262 | 46.49 | 4.79 | 71 (17.6%) | 46 (11.4%) | 47.52 | unstable | 65.56 | −0.764 |
| HpHSF14 | HperS398g0019 | 195 | 588 | 1981 | 22.35 | 8.86 | 26 (13.3%) | 30 (15.4%) | 63.69 | unstable | 58.10 | −0.818 |
| HpHSF15 | HperS042g0257 | 248 | 747 | 1956 | 27.78 | 5.78 | 40 (16.1%) | 37 (14.9%) | 46.02 | unstable | 61.33 | −0.817 |
| HpHSF16 | HperS434g0151 | 501 | 1506 | 2644 | 54.91 | 4.87 | 64 (12.8%) | 42 (8.4%) | 59.15 | unstable | 67.60 | −0.608 |
| HpHSF17 | HperS044g0424 | 483 | 1452 | 2149 | 53.92 | 4.99 | 63 (13.0%) | 42 (8.7%) | 51.71 | unstable | 74.66 | −0.533 |
| HpHSF18 | HperS443g0073 | 397 | 1194 | 1521 | 44.95 | 4.94 | 63 (15.9%) | 41 (10.3%) | 62.46 | unstable | 70.48 | −0.723 |
| HpHSF19 | HperS006g0172 | 188 | 567 | 1981 | 21.72 | 8.54 | 25 (13.3%) | 28 (14.9%) | 52.32 | unstable | 54.52 | −0.797 |
| HpHSF20 | HperS064g0032 | 455 | 1368 | 1950 | 51.78 | 5.91 | 64 (14.1%) | 57 (12.5%) | 62.11 | unstable | 71.12 | −0.644 |
| HpHSF21 | HperS068g0017 | 495 | 1488 | 2278 | 54.66 | 4.96 | 65 (13.1%) | 45 (9.1%) | 56.75 | unstable | 67.39 | −0.650 |
| HpHSF22 | HperS079g0626 | 270 | 813 | 1208 | 31.63 | 6.33 | 33 (12.2%) | 28 (10.4%) | 47.61 | unstable | 64.59 | −0.826 |
| HpHSF23 | HperS091g0277 | 363 | 1092 | 1604 | 41.62 | 5.39 | 57 (15.7%) | 43 (11.8%) | 61.47 | unstable | 69.53 | −0.784 |
Notes.
Notes
- MW (kDa)
- Molecular weight in kilo Dalton
- pI
- isoelectric point
- n.c.r
- total number of negatively charged residues (Asp +Glu)
- p.c.r.
- total number of positively charged residues (Arg +Lys)
- I.I.
- instability index
- A.I.
- aliphatic index
- GRAVY
- grand average of hydropathicity