Table 2.
Gene | Variant | Impact on protein | Effect of the variant | Allele frequency | Effect size | Effect of the variant | |||
---|---|---|---|---|---|---|---|---|---|
Europeans | Hispanics | Asians | Africans | ||||||
PNPLA3 | rs738409C>G | I148M | Complex: loss plus gain of function | 0.23 | 0.57 | 0.38 | 0.14 | +++ | Complex: loss plus gain of function |
TM6SF2 | rs58542926C>T | E167K | Loss of function | 0.08 | 0.03 | 0.07 | 0.04 | +++ | Loss of function |
GCKR | rs1260326T>C | P446L | Loss of function | 0.60 | 0.67 | 0.50 | 0.86 | + | Loss of function |
MBOAT7 | rs641738C>T | Linked to 3′-UTR | Reduced expression | 0.42 | 0.33 | 0.24 | 0.34 | + | Reduced expression |
HSD17B13 | rs72613567T>TA | Alternate splicing | Loss of function | 0.27 | 0.09 | 0.34 | 0.06 | ++ | Loss of function |
rs62305723G>A | P260S | 0.07 | 0.02 | 0.01 | |||||
IL28B (IFNL3/4) | rs368234815TT>dG | Alternate protein translation site | Alternative protein | 0.27 | 0.09 | 0.34 | 0.06 | + | Alternative protein |
MERTK | rs4374383G>A | Noncoding variant | Reduced expression | 0.37 | 0.37 | 0.73 | 0.47 | + | Reduced expression |
NAFLD non-alcoholic fatty liver disease, NASH non-alcoholic steatohepatitis
Adapted from ref. [64]