Table 1. Sequencing and sorting metrics.
Patient | Tumor | Tissue | Sorted with | Ploidy | Mutations/Mb | Mean coverage | Total reads |
---|---|---|---|---|---|---|---|
P6 | Primary | FF | DAPI | 3.6 | 2.4 | 57.99 | 116,651,162 |
P6 | Metastasis | FF | DAPI | 3.4 | 6 | 69.02 | 160,142,677 |
P6 | Non-tumor | FF | DAPI | 2 | – | 62.17 | 137,946,635 |
P9 | Primary | FF | DAPI | 3.9 | 4.6 | 68.41 | 148,484,030 |
P9 | Metastasis | FF | DAPI | 4 | 6.2 | 73.91 | 150,098,988 |
P9 | Non-tumor | FF | DAPI | 2 | – | 62.55 | 132,798,619 |
P18 | Primary | FF | DAPI | 3.6 | 6.6 | 51.15 | 114,207,787 |
P18 | Metastasis | FF | DAPI | 3.3 | 6.6 | 73.17 | 127,941,373 |
P18 | Non-tumor | FF | DAPI | 2 | – | 77.15 | 152,991,220 |
P103 | Primary | FFPE | DAPI/pCK | 3.3 | 6.9 | 63.32 | 199,580,439 |
P103 | Metastasis | FFPE | DAPI/pCK | 3.2 | 6.1 | 75.91 | 177,816,752 |
P103 | Non-tumor | FFPE | DAPI/pCK | 2 | – | 32.34 | 127,962,411 |
P109 | Primary | FF | DAPI | 3.6 | 6.2 | 91.92 | 142,302,414 |
P109 | Metastasis1 | FFPE | DAPI/pCK | 2 | 9.4 | 51.75 | 210,698,902 |
P109 | Metastasis2 | FFPE | DAPI/pCK | 1.8 | 4.8 | 98.72 | 157,381,241 |
P109 | Non-tumor | FFPE | DAPI/pCK | 2 | – | 58.87 | 231,972,945 |
FF, fresh frozen; FFPE, formalin-fixed paraffin-embedded; DAPI, 4',6-diamino-2-phenylindole; pCK, pan-cytokeratin.