Table 1.

Peptides generated from MS datasets

	Manuscript (Proteome Xchange ID)	SARS-CoV-2 peptides detected using Database Search Workflow	Detected peptides	SARS-CoV-2 peptides detected using Peptide Validation Workflow
Cell-culture datasets	Gouveia et al. (PXD018804)	139 peptides	630 distinct peptides	–
	Grenga et al. (PXD018594)	99 peptides		–
	Davidson et al. (PXD018241)	579 peptides		–
Clinical datasets	Cardozo et al. (PXD021328)	76 peptides		70 peptides	87 distinct peptides
	Ihling et al. (PXD019423)	8 peptides		21 peptides
	Rivera et al. (PXD020394)	–	–	10 peptides
	Leng et al. (PXD018094)	–	–	14 peptides
	Zeng et al. (PXD022085)	–	–	37 peptides
	Cardozo et al. (PXD025214)	–	–	39 peptides
	Bankar et al. (PXD023016)	–	–	35 Peptides