Table 2.

Area Under Curve (AUC) of Single Peptide Binding (SPB) prediction task of the five most frequent peptides in McPAS (20) and VDJdb (21) databases.

Peptide	McPAS			Peptide	VDJdb
	AE	LSTM	ERGO-I		AE	LSTM	ERGO-I
LPRRSGAAGA	0.827	0.820	0.772	KLGGALQAK	0.765	0.758	0.731
GILGFVFTL	0.876	0.886	0.843	GILGFVFTL	0.874	0.864	0.820
NLVPMVATV	0.884	0.886	0.835	NLVPMVATV	0.818	0.827	0.686
GLCTLVAML	0.861	0.871	0.816	AVFDRKSDAK	0.750	0.737	0.695
SSYRRPVGI	0.975	0.975	0.980	RAKFKQLL	0.820	0.774	0.828

The results are for AE-based and LSTM-based models, including TCRα, V, J genes, MHC and T-Cell type data usage. A comparison to ERGO-I best result is shown. Bolded values are the best results on a certain peptide.