TABLE 1.
A brief overview of the average summary statistics (i.e., number of samples, total raw read-pairs, average filtered/bar, average mapped/filtered) for each sample type of each library type (i.e., 16S amplicon libraries, 16S-cap enriched, and unenriched).
| Library type | Read length | Sample type | N samples | Total raw read-pairs | Total filtered reads | Average filtered/Raw (Mean ± SD) | Average mapped/Filtered (Mean ± SD) |
| Amplicon-16S/V3V4 | PE300 | Rat feces | 5 | 318,561 | 247,781 | (77.3 ± 6.2)% | NA |
| Amplicon-16S/V3V4 | PE300 | BEI Mock | 1 | 136,184 | 52,734 | 38.7% | NA |
| Amplicon-16S/V3V4 | PE300 | Zymo Mock | 1 | 49,828 | 24,301 | 48.8% | NA |
| Amplicon-16S/V4 | PE250 | Mice feces | 8 | 526,754 | 389,000 | (77.6 ± 7.1)% | NA |
| Enriched | PE150 | Mice feces | 8 | 11,474,476 | 8,321,081 | (70.1 ± 5.4)% | (59.1 ± 0.8)% |
| Enriched | PE150 | Rat feces | 5 | 9,470,428 | 6,450,541 | (72.9 ± 2.1)% | (57.8 ± 4.1)% |
| Enriched | PE150 | BEI Mock | 1 | 8,203,396 | 5,345,638 | 76.7% | 70.4% |
| Enriched | PE150 | Zymo Mock | 1 | 5,140,030 | 3,359,376 | 76.5% | 70.1% |
| Enriched | PE300 | Mice feces | 8 | 1,573,122 | 1,050,608 | (75.1 ± 3.2)% | (59.9 ± 2.1)% |
| Enriched | PE300 | BEI Mock | 1 | 1,108,481 | 737,309 | 75.2% | 75.7% |
| Enriched | PE300 | Zymo Mock | 1 | 721,740 | 467,250 | 77.2% | 73.8% |
| Unenriched | PE150 | Mice feces | 8 | 37,894,050 | 28,219,552 | (68.6 ± 6.4)% | 0.1% |
| Unenriched | PE150 | Rat feces | 5 | 28,448,468 | 16,266,683 | (87.4 ± 0.9)% | 0.1% |
| Unenriched | PE150 | BEI Mock | 1 | 8,889,636 | 6,263,379 | 71% | 0.2% |
| Unenriched | PE150 | Zymo Mock | 1 | 7,001,503 | 4,985,957 | 70.2% | 0.2% |