Table 1. Single nucleotide variations identified in the family with five CM-1 affected members when considering a dominant inheritance model.
Position (GRCh37/hg19) | Gene | Ref | Alt | dbsnp.b141 | Impact variant | PP2 | Shift | Mutation Taster | ExAC ENF | 1000G EUR | GoESP6500SI |
---|---|---|---|---|---|---|---|---|---|---|---|
chr3:48623625 | COL7A1 | C | T | rs149011081 | NS | D | D | D | 0.0029 | 0.0030 | 0.0030 |
chr3:130187662 | COL6A5 | G | T | rs115375867 | Stop gained | - | - | - | 0.0112 | 0.0010 | 0.0070 |
chr6:69348700 | ADGRB3 | A | G | rs138295002 | NS | B | T | D | 0.0005 | 0.0010 | 0.0010 |
chr6:56507522 | DST | C | T | rs749722200 | NS | D | D | - | 0.0001 | - | - |
chr8:37693279 | ADGRA2 | G | A | rs77369926 | NS | D | T | D | 0.0058 | 0.0050 | 0.0030 |
chr9:101816909 | COL15A1 | A | G | rs35544077 | NS | T | D | D | 0.0088 | 0.0050 | 0.0080 |
chr10:7628008 | ITIH5 | G | A | - | NS | D | D | D | - | - | - |
NS (nonsynonymous), D (deleterious), B (benign), T (tolerant)