Table 3.
Fim, pil, pap and ucl operon genes detected in 4071 ST131 genome assembles. The numbers and percentages of isolates per subclade with complete or absent (-) pil (pilK-pilV) or pap or ucl (uclABCD) operon genes where a subset also had three pap genes (papIBA). This focused on isolates allocated to the eleven main allelic options, isolates with some level of partial operon presence or absence were too sparse to be informative. UclBCD but not uclA was in an additional 2 % (n=77), including seven from A (2 %), 28 from B (6 %), none from C0, 24 from C1 (2 %), and 18 from C2 (1 %)
|
Operon |
Subclade |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
pil |
pap |
ucl |
A |
% |
B |
% |
C0 |
% |
C1 |
% |
C2 |
% |
Totals |
|
– |
papIBA |
– |
279 |
67 % |
107 |
25 % |
3 |
6 % |
772 |
69 % |
1192 |
58 % |
2353 |
|
– |
all |
all |
21 |
5 % |
13 |
3 % |
23 |
44 % |
82 |
7 % |
481 |
24 % |
620 |
|
all |
papIBA |
– |
57 |
14 % |
2 |
<1 % |
75 |
7 % |
66 |
3 % |
200 |
||
|
– |
all |
– |
1 |
<1 % |
94 |
22 % |
8 |
<1 % |
14 |
<1 % |
117 |
||
|
all |
– |
– |
3 |
<1 % |
71 |
16 % |
5 |
<1 % |
3 |
<1 % |
82 |
||
|
all |
all |
all |
16 |
4 % |
1 |
2 % |
10 |
<1 % |
33 |
2 % |
60 |
||
|
all |
all |
– |
1 |
<1 % |
6 |
1 % |
16 |
31 % |
4 |
<1 % |
27 |
||
|
all |
– |
all |
1 |
<1 % |
1 |
||||||||
|
– |
papIBA |
all |
1 |
<1 % |
1 |
||||||||
|
all |
papIBA |
all |
0 |
||||||||||
|
– |
– |
all |
0 |
||||||||||
|
Partial matches |
52 |
13 % |
124 |
29 % |
9 |
17 % |
168 |
15 % |
257 |
13 % |
610 |
||
|
Totals |
414 |
433 |
52 |
1121 |
2051 |
4071 |
|||||||