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. 2020 Nov 18;3(1):acmi000179. doi: 10.1099/acmi.0.000179

Table 3.

Fim, pil, pap and ucl operon genes detected in 4071 ST131 genome assembles. The numbers and percentages of isolates per subclade with complete or absent (-) pil (pilK-pilV) or pap or ucl (uclABCD) operon genes where a subset also had three pap genes (papIBA). This focused on isolates allocated to the eleven main allelic options, isolates with some level of partial operon presence or absence were too sparse to be informative. UclBCD but not uclA was in an additional 2 % (n=77), including seven from A (2 %), 28 from B (6 %), none from C0, 24 from C1 (2 %), and 18 from C2 (1 %)

Operon

Subclade

pil

pap

ucl

A

%

B

%

C0

%

C1

%

C2

%

Totals

papIBA

279

67 %

107

25 %

3

6 %

772

69 %

1192

58 %

2353

all

all

21

5 %

13

3 %

23

44 %

82

7 %

481

24 %

620

all

papIBA

57

14 %

2

<1 %

75

7 %

66

3 %

200

all

1

<1 %

94

22 %

8

<1 %

14

<1 %

117

all

3

<1 %

71

16 %

5

<1 %

3

<1 %

82

all

all

all

16

4 %

1

2 %

10

<1 %

33

2 %

60

all

all

1

<1 %

6

1 %

16

31 %

4

<1 %

27

all

all

1

<1 %

1

papIBA

all

1

<1 %

1

all

papIBA

all

0

all

0

Partial matches

52

13 %

124

29 %

9

17 %

168

15 %

257

13 %

610

Totals

414

433

52

1121

2051

4071