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. 2021 Apr 29;12:628795. doi: 10.3389/fpls.2021.628795

Table 5.

Best fit models for estimating percentage of seeds damaged by Leptoglossus occidentalis, based on the sample of 192 Pinus strobiformis trees.

Variable selection method Machine learning algorithm Independent variables RMSE MAE R2
ROC avNNet SMRPB, DD5, WINP, Mnppm, KCEC, GSP, Arbutus xalapensis, Juniperus deppeana 0.199 0.162 0.122
ROC brnn SMRPB, DD5, WINP, Mnppm, KCEC, GSP, Arbutus xalapensis, Juniperus deppeana 0.201 0.160 0.107
KWE rf MMAX, FDAY, SMRPB, SPRP, dieback, shootdeath, Slope, Znppm 0.203 0.163 0.140
KWE nnet MMAX, FDAY, SMRPB, SPRP, dieback, shootdeath, Slope, Znppm 0.203 0.164 0.076
ROC lm SMRPB, DD5, WINP, Mnppm, KCEC, GSP, Arbutus xalapensis, Juniperus deppeana 0.204 0.165 0.111
KWE mlpWeightDecay MMAX, FDAY, SMRPB, SPRP, dieback, shoot death, Slope, Znppm 0.219 0.174 0.082

ROC, Receiver Operating Characteristic; KWE, Kruskal Wallis selected with elevation; avNNet, Model Averaged Neural Network; brnn, Bayesian Regularized Neural Networks; rf, Random Forest; nnet, Neural Network; lm, linear regression; mlpWeightDecay, Multi-Layer Perceptron; RMSE, Root-mean-squared error; MAE, Mean Absolute Error; R2, Determination coefficient; SMRPB, Summer precipitation balance: (jul+aug+sep)/(apr+may+jun); DD5, Degree-days >5 degrees C (based on mean monthly temperature); WINP, Winter precipitation: (nov+dec+jan+feb); Mnppm, manganese concentration in the soil (ppm); KCEC, proportion of potassium in CEC (cation exchange capacity); GSP, Growing season precipitation (April to September); Arbutus xalapensis, frequency of occurrence of Arbutus xalapensis in the neighborhood; Juniperus deppeana, frequency of occurrence of Juniperus deppeana in the neighborhood; MMAX, Mean maximum temperature in the warmest month (degrees C); FDAY, Julian date of the first freezing date of autumn; SPRP, Spring precipitation: (apr+may), dieback, Cronartium ribicola damage measurement; shoot death, Cronartium ribicola damage measurement; Slope, slope position (%); Znppm, zinc concentration in the soil (ppm).