TABLE 3.
Description | Gene marker | GSE39582 | GSE41258 | ||
Cor | P | Cor | P | ||
CD8+ T cell | CD8A | 0.072 | 0.313 | 0.143 | 0.199 |
CD8B | −0.104 | 0.143 | NA | NA | |
T cell (general) | CD3D | −0.017 | 0.816 | 0.134 | 0.231 |
CD3E | −0.058 | 0.413 | −0.036 | 0.745 | |
CD2 | 0.162 | * | 0.207 | 0.063 | |
B cell | CD19 | −0.025 | 0.727 | 0.053 | 0.634 |
CD79A | −0.081 | 0.253 | 0.185 | 0.097 | |
Monocyte | CD86 | 0.537 | *** | −0.132 | 0.236 |
CD115 | 0.586 | *** | 0.585 | *** | |
TAM | CCL2 | 0.630 | *** | 0.681 | *** |
IL10 | 0.272 | ** | 0.087 | 0.436 | |
M1 Macrophage | NOS2 | −0.338 | *** | −0.499 | *** |
IRF5 | −0.033 | 0.645 | −0.051 | 0.646 | |
PTGS2 | 0.246 | ** | 0.252 | * | |
M2 Macrophage | CD163 | 0.564 | *** | 0.474 | *** |
VSIG4 | 0.521 | *** | 0.459 | *** | |
MS4A4A | 0.529 | *** | 0.573 | *** | |
Neutrophils | CEACAM8 | −0.145 | * | −0.364 | ** |
ITGAM | 0.640 | *** | 0.577 | *** | |
CCR7 | −0.035 | 0.618 | 0.115 | 0.305 | |
Natural killer cell | KIR2DL1 | −0.266 | ** | −0.037 | 0.740 |
KIR2DL3 | −0.254 | ** | −0.270 | * | |
KIR2DL4 | −0.199 | ** | −0.038 | 0.737 | |
KIR3DL1 | 0.066 | 0.355 | 0.371 | ** | |
KIR3DL3 | −0.279 | *** | −0.040 | 0.721 | |
Dendritic cell | HLA-DPB1 | 0.486 | *** | NA | NA |
HLA-DQB1 | 0.352 | *** | NA | NA | |
HLA-DRA | 0.422 | *** | NA | NA | |
HLA-DPA1 | 0.385 | *** | NA | NA | |
CD1C | 0.094 | 0.187 | −0.236 | * | |
NRP1 | 0.754 | *** | 0.742 | *** | |
ITGAX | 0.421 | *** | 0.312 | ** | |
Th1 | TBX21 | −0.032 | 0.654 | −0.086 | 0.444 |
STAT4 | 0.297 | *** | −0.279 | * | |
STAT1 | 0.406 | *** | 0.281 | * | |
IFNG | 0.047 | 0.511 | −0.308 | ** | |
TNF | 0.073 | 0.301 | −0.307 | ** | |
Th2 | GATA3 | 0.315 | *** | −0.031 | 0.784 |
STAT6 | −0.210 | ** | 0.070 | 0.534 | |
STAT5A | 0.042 | 0.558 | 0.124 | 0.265 | |
IL13 | −0.215 | ** | −0.219 | * | |
Tfh | BCL6 | 0.585 | *** | 0.705 | *** |
IL21 | 0.074 | 0.295 | −0.272 | * | |
Th17 | STAT3 | 0.034 | 0.633 | −0.002 | 0.984 |
IL17A | −0.067 | 0.349 | −0.370 | ** | |
Treg | FOXP3 | −0.094 | 0.185 | −0.400 | ** |
CCR8 | −0.076 | 0.282 | −0.132 | 0.236 | |
STAT5B | 0.264 | ** | 0.268 | * | |
TGFB1 | 0.598 | *** | 0.502 | *** | |
T cell exhaustion | PDCD1 | −0.270 | ** | −0.303 | ** |
CTLA4 | −0.319 | *** | −0.135 | 0.226 | |
HAVCR2 | 0.390 | *** | NA | NA | |
GZMB | −0.016 | 0.826 | 0.033 | 0.766 |
*p < 0.05; **p < 0.01; ***p < 0.0001. Cor, Pearson’s correlation value; TAM, tumor-associated macrophage; Th, T helper cell; Tfh, follicular helper T cell; Treg, regulatory T cell; NA, not available.