TABLE 2.
Pseudogenes unique to each straina
| Gene name | Protein name or function | Complete in 2457T? | Complete in PE577? | Descriptionoir commentb |
|---|---|---|---|---|
| acs | Acetate-CoA ligase | No | Yes | Truncation in CFS100 (248 aa); full length is 652 aa |
| aes | Acetyl esterase | No | Yes | Truncation in CFS100 (272 aa); full length is 319 aa |
| ag43 | Autotransporter adhesin Ag43 | No | Yes | Truncation in CFS100 (297 aa); full length is 1,040 aa |
| arnA | Bifunctional UDP-4-amino-4-deoyl-l-arabinose formyltransferase/UDP glucuroncic acid oxidase | No | Yes | Truncation in CFS100 (258 aa); full length is 660 aa |
| chbC | PTS N,N′-diacetylchitobiose transporter subunit IIC | No | Yes | Truncation in CFS100 (63 aa); full length is 449 aa |
| fusA | Elongation factor G | No | Yes | Truncation in CFS100 very early in protein (11 aa); full length is 704 aa |
| glpD | Glycerol-3-phosphate dehydrogenase | No | Yes | Truncation in CFS100 (56 aa); full length is 501 aa |
| glpF | Glycerol uptake facilitator protein GlpF | No | Yes | Truncation in CFS100 (214 aa); full length is 281 aa |
| hexR | DNA-binding transcriptional regulator HexR | No | Yes | Truncation in CFS100 (273 aa); full length is 289 aa |
| mreC | Rod shape-determining protein MreC | No | Yes | Truncation in CFS100 (298 aa); full length is 367 aa |
| nimT | 2-Nitroimidazole transporter | No | NA | Completely absent in PE577 |
| rpoS | RNA polymerase sigma factor | No | Yes | Truncation in CFS100 (254 aa); full length is 330 aa |
| tcyJ | Cystine ABC transporter substrate-binding protein | No | Yes | Truncation in CFS100 (176 aa); full length is 266 aa |
| trbL | P-type conjugative transfer protein | No | Yes | Truncation in CFS100 (261 aa); full length is 475 aa |
| wcaC | Colonic acid biosynthesis glycosyltransferase | No | Yes | Truncation in CFS100 (202 aa); full length is 405 aa |
| yfdV | Transporter YfdV | No | Yes | Truncation in CFS100 (253 aa); full length is 314 aa |
| yijE | Cystine transporter YijE | No | Yes | Truncation in CFS100 (141 aa); full length is 301 aa |
| acnA | Aconitate hydratase AcnA | Yes | No | Truncation in PE577 (237 aa); full length is 891 aa |
| dmsA | Dimethylsulfoxide reductase subunit A | Yes | No | Truncation in PE577 (119 aa); full length is 814 aa |
| glcC | Transcriptional regulator GlcC | Yes | Yes | Same sequence for residues 1 to 222, frameshift resulted in last 35 aa being different |
| hycC | Formate hydrogenlyase subunit 3 | Yes | No | Truncation in PE577 (227 aa); full length is 500 aa |
| malZ | Maltodextrin glucoside | Yes | No | Truncation in PE577 (391 aa); full length is 605 aa |
| yrbL | PhoP regulatory network protein YrbL | Yes | No | Truncation in PE577 (95 aa); full length is 210 aa |
a
“Complete” implies a full-length gene, but potential differences are based solely on genomic information, and some genes may remain functional even if truncated in length. NA, not applicable. Shading indicates strains which have a pseduogene.
b
aa, amino acids.